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Database: UniProt
Entry: K3Z602_SETIT
LinkDB: K3Z602_SETIT
Original site: K3Z602_SETIT 
ID   K3Z602_SETIT            Unreviewed;       466 AA.
AC   K3Z602;
DT   28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT   28-NOV-2012, sequence version 1.
DT   24-JAN-2024, entry version 57.
DE   RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
OS   Setaria italica (Foxtail millet) (Panicum italicum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria.
OX   NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:KQL14964, ECO:0000313|Proteomes:UP000004995};
RN   [1] {ECO:0000313|EnsemblPlants:KQL14964, ECO:0000313|Proteomes:UP000004995}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:KQL14964,
RC   ECO:0000313|Proteomes:UP000004995};
RX   PubMed=22580951; DOI=10.1038/nbt.2196;
RA   Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J.,
RA   Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., Jenkins J.,
RA   Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X.,
RA   Mitros T., Triplett J., Yang X., Ye C.Y., Mauro-Herrera M., Wang L., Li P.,
RA   Sharma M., Sharma R., Ronald P.C., Panaud O., Kellogg E.A., Brutnell T.P.,
RA   Doust A.N., Tuskan G.A., Rokhsar D., Devos K.M.;
RT   "Reference genome sequence of the model plant Setaria.";
RL   Nat. Biotechnol. 30:555-561(2012).
RN   [2] {ECO:0000313|EnsemblPlants:KQL14964}
RP   IDENTIFICATION.
RC   STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:KQL14964};
RG   EnsemblPlants;
RL   Submitted (AUG-2018) to UniProtKB.
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DR   EMBL; AGNK02001629; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   AlphaFoldDB; K3Z602; -.
DR   STRING; 4555.K3Z602; -.
DR   EnsemblPlants; KQL14964; KQL14964; SETIT_021970mg.
DR   Gramene; KQL14964; KQL14964; SETIT_021970mg.
DR   eggNOG; KOG4362; Eukaryota.
DR   HOGENOM; CLU_025968_0_0_1; -.
DR   InParanoid; K3Z602; -.
DR   OMA; QTHKRNT; -.
DR   Proteomes; UP000004995; Chromosome III.
DR   GO; GO:0070531; C:BRCA1-A complex; IBA:GO_Central.
DR   GO; GO:0031436; C:BRCA1-BARD1 complex; IBA:GO_Central.
DR   GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0004842; F:ubiquitin-protein transferase activity; IBA:GO_Central.
DR   GO; GO:0000724; P:double-strand break repair via homologous recombination; IBA:GO_Central.
DR   GO; GO:0045717; P:negative regulation of fatty acid biosynthetic process; IBA:GO_Central.
DR   GO; GO:0035067; P:negative regulation of histone acetylation; IBA:GO_Central.
DR   GO; GO:0035066; P:positive regulation of histone acetylation; IBA:GO_Central.
DR   GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   Gene3D; 3.40.50.10190; BRCT domain; 1.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR   InterPro; IPR031099; BRCA1-associated.
DR   InterPro; IPR001357; BRCT_dom.
DR   InterPro; IPR036420; BRCT_dom_sf.
DR   InterPro; IPR034732; EPHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR13763:SF6; BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1; 1.
DR   PANTHER; PTHR13763; BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1; 1.
DR   Pfam; PF00533; BRCT; 1.
DR   Pfam; PF13771; zf-HC5HC2H; 1.
DR   SMART; SM00292; BRCT; 2.
DR   SMART; SM00249; PHD; 1.
DR   SUPFAM; SSF52113; BRCT domain; 1.
DR   PROSITE; PS50172; BRCT; 2.
DR   PROSITE; PS51805; EPHD; 1.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000004995};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT   DOMAIN          37..157
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS51805"
FT   DOMAIN          247..333
FT                   /note="BRCT"
FT                   /evidence="ECO:0000259|PROSITE:PS50172"
FT   DOMAIN          356..456
FT                   /note="BRCT"
FT                   /evidence="ECO:0000259|PROSITE:PS50172"
FT   REGION          168..220
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        168..203
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   466 AA;  52595 MW;  F63B81BEE5685596 CRC64;
     MQRYVLEQGQ MQSQVFKRDI GGTTELKRLQ TPINLFEDEC IFCHSFRTDE EIHGPMVCYL
     KGRLVFIEEG NLSKVIYVHK KCLMWWGSVF CSNIVENLES EIRRASRLRC ARCGLQGAAL
     GCYYKHCRKS FHIPCAVQII DCRWDVDKRN VLCPKHVSKT LPCDKLSTHT KENDHSSSLR
     QSQHSDEEGI SKNHERDDQQ THKRNTSNFP SLPKSCHPDE EGISNVYKRE EIKAYRADTS
     SCPSDQMVLL GLSLSASEKD SLQEFVRWSN GKLTKEWDKN VTHVIVGKGP GSSWNRSFEV
     LMAVLLGKWV IHFEWIMDCS SEMRPRPEAS YEVTSSMDSL KTMDGPKKGR IRAATGAPNL
     FSGLHFCLSA YMNPDGRHRV RDLIAAAGGK VLEGGFLDPP LECFDGSSSV KPYFVFDGDV
     PGEFALGTLL KEVEEARKHA AAGARVISHQ RVLDAVAAYD AEILNR
//
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