ID K3ZPW5_SETIT Unreviewed; 1855 AA.
AC K3ZPW5;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 24-JAN-2024, entry version 62.
DE RecName: Full=rRNA biogenesis protein RRP5 {ECO:0008006|Google:ProtNLM};
OS Setaria italica (Foxtail millet) (Panicum italicum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria.
OX NCBI_TaxID=4555 {ECO:0000313|EnsemblPlants:KQL22931, ECO:0000313|Proteomes:UP000004995};
RN [1] {ECO:0000313|EnsemblPlants:KQL22931, ECO:0000313|Proteomes:UP000004995}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:KQL22931,
RC ECO:0000313|Proteomes:UP000004995};
RX PubMed=22580951; DOI=10.1038/nbt.2196;
RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J.,
RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., Jenkins J.,
RA Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X.,
RA Mitros T., Triplett J., Yang X., Ye C.Y., Mauro-Herrera M., Wang L., Li P.,
RA Sharma M., Sharma R., Ronald P.C., Panaud O., Kellogg E.A., Brutnell T.P.,
RA Doust A.N., Tuskan G.A., Rokhsar D., Devos K.M.;
RT "Reference genome sequence of the model plant Setaria.";
RL Nat. Biotechnol. 30:555-561(2012).
RN [2] {ECO:0000313|EnsemblPlants:KQL22931}
RP IDENTIFICATION.
RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:KQL22931};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000256|ARBA:ARBA00004604}.
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DR EMBL; AGNK02000741; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR STRING; 4555.K3ZPW5; -.
DR EnsemblPlants; KQL22931; KQL22931; SETIT_028645mg.
DR Gramene; KQL22931; KQL22931; SETIT_028645mg.
DR eggNOG; KOG1070; Eukaryota.
DR HOGENOM; CLU_000845_1_1_1; -.
DR InParanoid; K3ZPW5; -.
DR OMA; GQYLRAY; -.
DR Proteomes; UP000004995; Chromosome II.
DR GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR GO; GO:0032040; C:small-subunit processome; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR CDD; cd05695; S1_Rrp5_repeat_hs3; 1.
DR CDD; cd04461; S1_Rrp5_repeat_hs8_sc7; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 12.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR003107; HAT.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR045209; Rrp5.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR002792; TRAM_dom.
DR PANTHER; PTHR23270; PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5; 1.
DR PANTHER; PTHR23270:SF10; PROTEIN RRP5 HOMOLOG; 1.
DR Pfam; PF00575; S1; 5.
DR SMART; SM00386; HAT; 6.
DR SMART; SM00316; S1; 14.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 13.
DR SUPFAM; SSF48452; TPR-like; 2.
DR PROSITE; PS50126; S1; 12.
DR PROSITE; PS50926; TRAM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000004995};
KW rRNA processing {ECO:0000256|ARBA:ARBA00022552}.
FT DOMAIN 141..220
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 300..370
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 386..459
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 433..494
FT /note="TRAM"
FT /evidence="ECO:0000259|PROSITE:PS50926"
FT DOMAIN 476..544
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 564..633
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 716..785
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 824..886
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 1007..1083
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 1106..1177
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 1203..1277
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 1310..1379
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 1400..1470
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT REGION 1..106
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1523..1558
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..42
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 68..106
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1532..1558
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1855 AA; 205554 MW; FFF1AB8FB578A2E5 CRC64;
MAPPRGDRKK GKGGGGGKTD LRPDRKQFKK HRKEEAASEQ GDCDGEHQQP GSAALLAAAS
DEADFPRGGR SFLSKDEVAE ARAEAEEDFE REGKKGKRKR KAGESSGFGA DDDLGTLFGG
ATTGKLPRFA NRITLKNVSP NMKLWGVVIE VNQKDIVLSL PGGMRGFVRS EDVCDIALHE
NRKDSENSIC AEVVHVGQLV PCIVLRVDDD RKEGKVLAAQ VKSVEDHGYI LHFGVPSFSG
FMQKADKENV KIEPRQLIQC VVKAIDKTRA IVHLSSDEDL VSKSIIKDLK GLSIDHLIPG
MMVNARVHSV LENGVMLSFL TYFSGTVDIF NLSNPFPSGN WKDGYSKNKK VNARILFVDP
STRAVGLTLN KHLLHLEVPP INLKAGDIYD KSKVLRIDKK AGLFLEIPSS TPSPGFISIH
DVSDKDVKNL EKKFKEGSSL RVRILGVRNL EGVAIGTVKD SAFEGSVFTH DDVKPGMLVR
AKVVTVEPFG AIVQFSSGVK ALCPLPHMSE LEHVVKPPKK FKAGAELLFR VLGCKSKRVT
VTCKKSLVKS KLDVLASYAD AKVGLVTHGW IAKIEKHGCF VKFYNGVQGF VSRSELGLEA
GTEAENVYHV GQVIKCRIIS VLPASRRINV SFVISHNRII PADIAKLGSI VSGVVERLTP
AAVVVSVNGF SKGTILNEHL ADHHDIEGQN LVLSAKHSLI NSSNDIPSEI LQMHPGALVH
GYICNIIEAG CFVRFLGHLT GFSPKDKAVD RRVEKLSDAF YVGQSVRSHI LSVNAETARV
KLSLQQSMCS STDSSFIQGY FLLDQKISAL KYSSHDWAHA FGIGSLVEGE VGAIEEYGIV
LNFNDHPDVV GLIEHHQLSD STLEVGSSVK GLVLDLSDGV VNLSLKPELI SSVRIGGTKK
KRQRPTVADL ELHEEVNAVV EIVKESYVVL SIPEYNYAIG FASLMDYNSQ LLATHRYDNG
QRITVVVGNI PSSDPSGRLI LLPKASAQDS GLSGSKRAKK KSEYKVGSLV EAEIIDIKPL
ELILKFGANL HGRIHITEVL EEDSAERPFS KLRIGQKLTA RIVAEAEPSG KNGKNFKWEL
SIRPSMLKGE FEESTAHKEE FNHTTNVVVC GYVVRVDKEW VWLTVSRNVM AHLFILDSSS
DPSELKQFQQ RFSVGQAVKG CVISVNREKR LLRVKALDNQ CAQHNIDKIQ QSESSLVEQT
KQGDVIGGRV QKILPGVGGL VVQIGPHLHG RVHYTEIVDS WVADPLSGFH EGQFVKCKVL
SVSRSSEGSL RVDLSLRSSN IRTDSSNSRL FDEGATCIPR IEKIEDLLPG TEIKGYVKNV
NPKGCFIMLS RMVEARITLS NLSDEYVENP QKDFPVGMLV HGRVLSTDPS SGRVEASLRK
NTGSKLEKPD DINYSDLHVG DIIDGQVKRV ESYGLFVTIR SSELVGLCHV SELSDEPVLD
INSRYKAGDM VKAKILKIDE KRHRVSLGMK KSYFDCGLTA GTNDDDEIAP MDISIASQVA
GYHNKVHSAA EPRASVLPLQ VSLDESEGSD LEDNSNEGHE IANGSEANAK KSDKRLKKEA
RKQRELEISA LEERALQGDI PRTPDDFEKL VRSSPNSSFV WIKYMACLLD LADVEKARAI
AERALKTIIP REEEERLNVW VAYFNLENEY GSPREDAVKK VFQRALQYCD HKKLHLALLA
VYERTEQYEL ADELLDRMTK RFKTSCKIWL CRIQFALKQG KDVEYIKAVV NRALLSLPQR
KRIKFLSKTA ILEFKCGAPE EGRSRFELIL REYPKRTDLW SVYLDQEIRL GDIEIIRGLF
DKATCLTLPP KKMQFLFKKY LKFEKSLGED NERIQHVQQI AMKYVQSSLP SESHP
//
