ID K7F9X7_PELSI Unreviewed; 732 AA.
AC K7F9X7;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE SubName: Full=Tripartite motif containing 42 {ECO:0000313|Ensembl:ENSPSIP00000004837.1};
GN Name=TRIM42 {ECO:0000313|Ensembl:ENSPSIP00000004837.1};
OS Pelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia;
OC Trionychidae; Pelodiscus.
OX NCBI_TaxID=13735 {ECO:0000313|Ensembl:ENSPSIP00000004837.1, ECO:0000313|Proteomes:UP000007267};
RN [1] {ECO:0000313|Proteomes:UP000007267}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Daiwa-1 {ECO:0000313|Proteomes:UP000007267};
RG Soft-shell Turtle Genome Consortium;
RL Submitted (OCT-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000007267}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Daiwa-1 {ECO:0000313|Proteomes:UP000007267};
RX PubMed=23624526; DOI=10.1038/ng.2615;
RA Wang Z., Pascual-Anaya J., Zadissa A., Li W., Niimura Y., Huang Z., Li C.,
RA White S., Xiong Z., Fang D., Wang B., Ming Y., Chen Y., Zheng Y.,
RA Kuraku S., Pignatelli M., Herrero J., Beal K., Nozawa M., Li Q., Wang J.,
RA Zhang H., Yu L., Shigenobu S., Wang J., Liu J., Flicek P., Searle S.,
RA Wang J., Kuratani S., Yin Y., Aken B., Zhang G., Irie N.;
RT "The draft genomes of soft-shell turtle and green sea turtle yield insights
RT into the development and evolution of the turtle-specific body plan.";
RL Nat. Genet. 45:701-706(2013).
RN [3] {ECO:0000313|Ensembl:ENSPSIP00000004837.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AGCU01164628; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; K7F9X7; -.
DR STRING; 13735.ENSPSIP00000004837; -.
DR Ensembl; ENSPSIT00000004864.1; ENSPSIP00000004837.1; ENSPSIG00000004519.1.
DR eggNOG; KOG2177; Eukaryota.
DR GeneTree; ENSGT00530000064220; -.
DR HOGENOM; CLU_023245_0_0_1; -.
DR OMA; FGNQQIY; -.
DR OrthoDB; 5383069at2759; -.
DR TreeFam; TF336556; -.
DR Proteomes; UP000007267; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd00063; FN3; 1.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 1.
DR Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR003961; FN3_dom.
DR InterPro; IPR036116; FN3_sf.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR047153; TRIM45/56/19.
DR InterPro; IPR000315; Znf_B-box.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR25462; BONUS, ISOFORM C-RELATED; 1.
DR PANTHER; PTHR25462:SF255; TRIPARTITE MOTIF CONTAINING 42; 1.
DR Pfam; PF00041; fn3; 1.
DR Pfam; PF00643; zf-B_box; 1.
DR SMART; SM00060; FN3; 1.
DR SMART; SM00184; RING; 2.
DR SUPFAM; SSF57845; B-box zinc-binding domain; 1.
DR SUPFAM; SSF49265; Fibronectin type III; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50853; FN3; 1.
DR PROSITE; PS50119; ZF_BBOX; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000007267};
KW Signal {ECO:0000256|SAM:SignalP}; Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00024}.
FT SIGNAL 1..17
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 18..732
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5003904876"
FT DOMAIN 152..197
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 292..333
FT /note="B box-type"
FT /evidence="ECO:0000259|PROSITE:PS50119"
FT DOMAIN 611..710
FT /note="Fibronectin type-III"
FT /evidence="ECO:0000259|PROSITE:PS50853"
SQ SEQUENCE 732 AA; 85176 MW; 29574700D30E5BC4 CRC64;
MVSMLCLSWP CCPGCRCCPP LQRTDQECCS CWRFFFTDER NCSCCPCPYA EGRACQCCHC
SCSENPNCRW CCCSCSNDPD CKCCCCTSEN TTCQYYESRC CRNTLYASYL PRARRRHHSK
VALPRFRSKS DTSIITLERD ASGHAFRDQL TCPLCKQLYL YPFMLPCNHC ICEKCIDKRK
AQAEVTENFF IIICPVCVKA HCLPYTNKIQ LNMNYLRAKL ARRYMRRHGF LRWRFDKTRA
SIYCQLCKEK TKKASKRCLT CRMNFCNECL RLYHSEVSHQ DHIFTKAYQE EQGESCCLFH
PHSNLSGYCL DDHELICQFC KDTLHNDHET LPLPLACSKE AASLFSAIAK FKKVRYGVDN
DLMEMLLLKN NFKSYKETKR KEIRNGFLKL RNIIREQEKE MTEFLENIEL KKEKGILEYV
THTSRKISQM DSLIQYSKEA LKEENQIAFL QSANVLVNEI EDAIANIYQP SARLREDPIQ
NLKLNFEELS ANMHDLFQTP VRMKQSADKA NKAPYPCNSD IMVPRKISST HTERHTSVFR
SPSLSTLNSQ YESTMMKKEI SRRSSSTPPP HYKERNEMFT FWDASTQISR KERNHQSTQS
PEPYHNGSAL FPGLVIIYQT LVYPRTAKIY WTCPTEDVDF FDVEFYEVVS ISPDNIVQTQ
LAGELHGIMN QNLELHNLEP NTEYLFKVRA VNVNGPGQWS EICKVVTPNV HEKARGRWGL
LRSIQSAFYK QL
//
