ID K7FCS9_PELSI Unreviewed; 362 AA.
AC K7FCS9;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE RecName: Full=HTH CENPB-type domain-containing protein {ECO:0008006|Google:ProtNLM};
OS Pelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia;
OC Trionychidae; Pelodiscus.
OX NCBI_TaxID=13735 {ECO:0000313|Ensembl:ENSPSIP00000005839.1, ECO:0000313|Proteomes:UP000007267};
RN [1] {ECO:0000313|Proteomes:UP000007267}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Daiwa-1 {ECO:0000313|Proteomes:UP000007267};
RG Soft-shell Turtle Genome Consortium;
RL Submitted (OCT-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000007267}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Daiwa-1 {ECO:0000313|Proteomes:UP000007267};
RX PubMed=23624526; DOI=10.1038/ng.2615;
RA Wang Z., Pascual-Anaya J., Zadissa A., Li W., Niimura Y., Huang Z., Li C.,
RA White S., Xiong Z., Fang D., Wang B., Ming Y., Chen Y., Zheng Y.,
RA Kuraku S., Pignatelli M., Herrero J., Beal K., Nozawa M., Li Q., Wang J.,
RA Zhang H., Yu L., Shigenobu S., Wang J., Liu J., Flicek P., Searle S.,
RA Wang J., Kuratani S., Yin Y., Aken B., Zhang G., Irie N.;
RT "The draft genomes of soft-shell turtle and green sea turtle yield insights
RT into the development and evolution of the turtle-specific body plan.";
RL Nat. Genet. 45:701-706(2013).
RN [3] {ECO:0000313|Ensembl:ENSPSIP00000005839.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the tigger transposable element derived protein
CC family. {ECO:0000256|ARBA:ARBA00010881}.
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DR EMBL; AGCU01003925; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; K7FCS9; -.
DR Ensembl; ENSPSIT00000005875.1; ENSPSIP00000005839.1; ENSPSIG00000005424.1.
DR GeneTree; ENSGT00940000163154; -.
DR HOGENOM; CLU_018294_1_4_1; -.
DR Proteomes; UP000007267; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR004875; DDE_SF_endonuclease_dom.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR006600; HTH_CenpB_DNA-bd_dom.
DR InterPro; IPR007889; HTH_Psq.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR PANTHER; PTHR19303:SF75; HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR19303; TRANSPOSON; 1.
DR Pfam; PF04218; CENP-B_N; 1.
DR Pfam; PF03184; DDE_1; 1.
DR Pfam; PF03221; HTH_Tnp_Tc5; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000007267}.
FT DOMAIN 4..53
FT /note="HTH psq-type"
FT /evidence="ECO:0000259|Pfam:PF04218"
FT DOMAIN 73..124
FT /note="HTH CENPB-type"
FT /evidence="ECO:0000259|Pfam:PF03221"
FT DOMAIN 195..357
FT /note="DDE-1"
FT /evidence="ECO:0000259|Pfam:PF03184"
SQ SEQUENCE 362 AA; 40822 MW; 6AF58DEDBC615B39 CRC64;
SASKKHRKLF TLKEKLEVIK RIEKGEHNCD ISCALNMHES SVRMIRAQAE KIKESCKNAT
PVSAKKVAIF SMWIEDQTQL SLAVIQEEAK ALYDAVKLEL NETDAKPFTA SHGWFDCFKK
SSNLYNVKIT GEADAADIEA AESFPAIFET IIKEGGYLSQ QVFNLNETGL YWKHMPARTY
ISRDEAYAPG FKAAKDHMTV MLCTNSNGDC KLKPIIVYCL ANPRALAEYS KDYIPVVWKS
NVKAWVTASI FIVYFCNCLT AELKENLAFK ILLVLDNAPG HPPCLIDLSE NILPPNMTSL
IQPLDQGVIA AFKHTFARLI RGRDVKEFWR KFNVKDAIDI LAEAWAEVSS SCLNAVWCRV
WP
//
