ID K7GDP7_PELSI Unreviewed; 669 AA.
AC K7GDP7;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE SubName: Full=Glycerophosphocholine phosphodiesterase 1 {ECO:0000313|Ensembl:ENSPSIP00000018408.1};
GN Name=GPCPD1 {ECO:0000313|Ensembl:ENSPSIP00000018408.1};
OS Pelodiscus sinensis (Chinese softshell turtle) (Trionyx sinensis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia;
OC Trionychidae; Pelodiscus.
OX NCBI_TaxID=13735 {ECO:0000313|Ensembl:ENSPSIP00000018408.1, ECO:0000313|Proteomes:UP000007267};
RN [1] {ECO:0000313|Proteomes:UP000007267}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Daiwa-1 {ECO:0000313|Proteomes:UP000007267};
RG Soft-shell Turtle Genome Consortium;
RL Submitted (OCT-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000007267}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Daiwa-1 {ECO:0000313|Proteomes:UP000007267};
RX PubMed=23624526; DOI=10.1038/ng.2615;
RA Wang Z., Pascual-Anaya J., Zadissa A., Li W., Niimura Y., Huang Z., Li C.,
RA White S., Xiong Z., Fang D., Wang B., Ming Y., Chen Y., Zheng Y.,
RA Kuraku S., Pignatelli M., Herrero J., Beal K., Nozawa M., Li Q., Wang J.,
RA Zhang H., Yu L., Shigenobu S., Wang J., Liu J., Flicek P., Searle S.,
RA Wang J., Kuratani S., Yin Y., Aken B., Zhang G., Irie N.;
RT "The draft genomes of soft-shell turtle and green sea turtle yield insights
RT into the development and evolution of the turtle-specific body plan.";
RL Nat. Genet. 45:701-706(2013).
RN [3] {ECO:0000313|Ensembl:ENSPSIP00000018408.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SIMILARITY: Belongs to the glycerophosphoryl diester phosphodiesterase
CC family. {ECO:0000256|ARBA:ARBA00007277}.
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DR EMBL; AGCU01171726; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AGCU01171727; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AGCU01171728; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AGCU01171729; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_006136061.1; XM_006135999.1.
DR STRING; 13735.ENSPSIP00000018408; -.
DR Ensembl; ENSPSIT00000018494.1; ENSPSIP00000018408.1; ENSPSIG00000016361.1.
DR GeneID; 102452347; -.
DR KEGG; pss:102452347; -.
DR CTD; 56261; -.
DR eggNOG; KOG2421; Eukaryota.
DR GeneTree; ENSGT00440000033970; -.
DR HOGENOM; CLU_013007_2_0_1; -.
DR OrthoDB; 1005457at2759; -.
DR TreeFam; TF314722; -.
DR Proteomes; UP000007267; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:Ensembl.
DR GO; GO:0047389; F:glycerophosphocholine phosphodiesterase activity; IEA:Ensembl.
DR GO; GO:2001070; F:starch binding; IEA:InterPro.
DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR GO; GO:0007519; P:skeletal muscle tissue development; IEA:Ensembl.
DR CDD; cd05814; CBM20_Prei4; 1.
DR CDD; cd08607; GDPD_GDE5; 1.
DR Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR Gene3D; 3.20.20.190; Phosphatidylinositol (PI) phosphodiesterase; 1.
DR InterPro; IPR013784; Carb-bd-like_fold.
DR InterPro; IPR034839; CBM20_GPCPD1.
DR InterPro; IPR002044; CBM_fam20.
DR InterPro; IPR030395; GP_PDE_dom.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR PANTHER; PTHR22958:SF1; GLYCEROPHOSPHOCHOLINE PHOSPHODIESTERASE GPCPD1; 1.
DR PANTHER; PTHR22958; GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; 1.
DR Pfam; PF00686; CBM_20; 1.
DR Pfam; PF03009; GDPD; 1.
DR SMART; SM01065; CBM_2; 1.
DR SUPFAM; SSF51695; PLC-like phosphodiesterases; 1.
DR SUPFAM; SSF49452; Starch-binding domain-like; 1.
DR PROSITE; PS51166; CBM20; 1.
DR PROSITE; PS51704; GP_PDE; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000007267}.
FT DOMAIN 1..115
FT /note="CBM20"
FT /evidence="ECO:0000259|PROSITE:PS51166"
FT DOMAIN 315..615
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
SQ SEQUENCE 669 AA; 76073 MW; 6B845ED2B816A496 CRC64;
MTPSQVSFEI RGTSIPGEVF AICGSCNSLG NWNPQNAVVL QADDADDDGM LWKTTVELTR
GVAVQYRYFK GCFLEPKTID GPCQVIVHKW ETHLQPRSIT PLENDIAVDD GQFGIHNGVQ
TLDSGWLTCQ TEIRLRLHYS EKPPVSISKN KFKKSRFRVK LTLEGLEEEE EEEDNQDKTC
LTLHKTANTL EISLISDNEY KSRHSQPECG YGLQPDRWTE YSIQTMEPDN LELIFDFFEE
DLSETVVQGD ELPGHVGSAC LLSSTXXXXX XPIMSRISRK TIGKVRVDYI IIKPISGYNC
DMKASYAKYW KPRTTLDVGH RGAGNSTTTT KLAKVQENTI ASLRNAASHG AAFVEFDVHL
SKDHVPVVYH DLTCCMAMKK KFDAEPLELF EIPVKELSYD QLQLLKVSHV TALKLKDHDA
YFKGEENAVY ENQPFPSLQT VLESLPEDVG YNIEIKWICQ QRDGKWDGNL ATYFDMNLFL
DVILKTTLVN AGRRRIIYSS FDADICTMVR QKQNKYPVLF LTQGKSDVYP ELMDLRSRTT
PIAMSFAQFE NLLGINVHTE DILRNPSYIQ EAKSKGLVIF CWGDDTNDPE NRKKLREYGV
NGLIYDRIYD WMPEQPNIFQ VEQLESLKEE LPELKFCICP TVSHFSSASL CKCRNSHVET
NGLDNLTNA
//
