ID K7KM48_SOYBN Unreviewed; 514 AA.
AC K7KM48;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 24-JAN-2024, entry version 62.
DE RecName: Full=VHS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100792343 {ECO:0000313|EnsemblPlants:KRH64588};
GN ORFNames=GLYMA_04G243600 {ECO:0000313|EMBL:KRH64588.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH64588.1};
RN [1] {ECO:0000313|EMBL:KRH64588.1, ECO:0000313|EnsemblPlants:KRH64588}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH64588};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH64588.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH64588}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH64588};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH64588.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH64588.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004170};
CC Peripheral membrane protein {ECO:0000256|ARBA:ARBA00004170}.
CC -!- SIMILARITY: Belongs to the TOM1 family.
CC {ECO:0000256|ARBA:ARBA00007708}.
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DR EMBL; CM000837; KRH64588.1; -; Genomic_DNA.
DR RefSeq; XP_003523415.1; XM_003523367.3.
DR AlphaFoldDB; K7KM48; -.
DR SMR; K7KM48; -.
DR STRING; 3847.K7KM48; -.
DR PaxDb; 3847-GLYMA04G42246-1; -.
DR EnsemblPlants; KRH64588; KRH64588; GLYMA_04G243600.
DR GeneID; 100792343; -.
DR Gramene; KRH64588; KRH64588; GLYMA_04G243600.
DR KEGG; gmx:100792343; -.
DR eggNOG; KOG1087; Eukaryota.
DR HOGENOM; CLU_026748_2_1_1; -.
DR InParanoid; K7KM48; -.
DR OMA; NPTAMPG; -.
DR OrthoDB; 472902at2759; -.
DR Proteomes; UP000008827; Chromosome 4.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0035091; F:phosphatidylinositol binding; IEA:InterPro.
DR GO; GO:0043130; F:ubiquitin binding; IEA:InterPro.
DR GO; GO:0043328; P:protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; IEA:InterPro.
DR CDD; cd14231; GAT_GGA-like_plant; 1.
DR CDD; cd03561; VHS; 1.
DR Gene3D; 1.20.58.160; -; 1.
DR Gene3D; 1.25.40.90; -; 1.
DR InterPro; IPR008942; ENTH_VHS.
DR InterPro; IPR004152; GAT_dom.
DR InterPro; IPR038425; GAT_sf.
DR InterPro; IPR044836; TOL_plant.
DR InterPro; IPR014645; TOM1.
DR InterPro; IPR002014; VHS_dom.
DR PANTHER; PTHR45898; TOM1-LIKE PROTEIN; 1.
DR PANTHER; PTHR45898:SF14; TOM1-LIKE PROTEIN 4; 1.
DR Pfam; PF03127; GAT; 1.
DR Pfam; PF00790; VHS; 1.
DR PIRSF; PIRSF036948; TOM1; 1.
DR SMART; SM00288; VHS; 1.
DR SUPFAM; SSF48464; ENTH/VHS domain; 1.
DR SUPFAM; SSF89009; GAT-like domain; 1.
DR PROSITE; PS50909; GAT; 1.
DR PROSITE; PS50179; VHS; 1.
PE 3: Inferred from homology;
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT DOMAIN 12..141
FT /note="VHS"
FT /evidence="ECO:0000259|PROSITE:PS50179"
FT DOMAIN 178..266
FT /note="GAT"
FT /evidence="ECO:0000259|PROSITE:PS50909"
FT REGION 287..492
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 355..409
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 440..487
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 514 AA; 56141 MW; 70F60ACF68701308 CRC64;
MANNAAACAE RATSDMLIGP DWAINIELCD IINMDPGQAK DALKILKKRL ASKNPKIQLL
ALFVLETLSK NCGESVFQQI IERDILHEMV KIVKKKPDLN VREKILILID TWQEAFGGPT
GVYPQYYAAY NELKSAGVEF PPRDENSVPF FTPAQTQPII HSAAEYDDAT IQASLQSDAS
DLSLLEIQNA QGLADVLMEM LSALSPKDRE GVKEEVIVDL VDQCRSYQKR VMLLVNNTTD
EQLLGQGLAL NDSLQRVLCR HDDIVKGTAD SGAREAETSV LPLVNVNHED DESEDDFAQL
AHRSSRDTQA QNQKPAYDKA EPGRINPLIP PPPASKKPVY SGTGMVDYLS GDTYKTEGSP
ENSEPTSFTA PLHSSPNPTS STIPSLSSSH PHAVSTTSSP IFSSEPVYDE QPSSEDKSSE
CLPAAPWDAQ SPGIIPPPPS KYNQRQQFFE QQGVSHSSSG SSSSYDSLVG QTQNLSLNSS
TPTKQQKPED ALFKDLVDFA KSKTSSSSKP NRSY
//
