ID K7KM59_SOYBN Unreviewed; 785 AA.
AC K7KM59;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 72.
DE RecName: Full=SWI/SNF complex subunit SWI3C {ECO:0008006|Google:ProtNLM};
GN Name=100780440 {ECO:0000313|EnsemblPlants:KRH64632};
GN ORFNames=GLYMA_04G247200 {ECO:0000313|EMBL:KRH64632.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH64632.1};
RN [1] {ECO:0000313|EMBL:KRH64632.1, ECO:0000313|EnsemblPlants:KRH64632}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH64632};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH64632.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH64632}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH64632};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH64632.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH64632.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000837; KRH64632.1; -; Genomic_DNA.
DR RefSeq; XP_006578964.1; XM_006578901.2.
DR AlphaFoldDB; K7KM59; -.
DR SMR; K7KM59; -.
DR STRING; 3847.K7KM59; -.
DR PaxDb; 3847-GLYMA04G42601-1; -.
DR EnsemblPlants; KRH64632; KRH64632; GLYMA_04G247200.
DR GeneID; 100780440; -.
DR Gramene; KRH64632; KRH64632; GLYMA_04G247200.
DR KEGG; gmx:100780440; -.
DR eggNOG; KOG1279; Eukaryota.
DR HOGENOM; CLU_004447_4_1_1; -.
DR InParanoid; K7KM59; -.
DR OMA; QQFNEME; -.
DR OrthoDB; 1220797at2759; -.
DR Proteomes; UP000008827; Chromosome 4.
DR GO; GO:0005634; C:nucleus; IEA:UniProt.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd00167; SANT; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR InterPro; IPR032451; SMARCC_C.
DR InterPro; IPR007526; SWIRM.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR000433; Znf_ZZ.
DR PANTHER; PTHR12802:SF41; BRAHMA ASSOCIATED PROTEIN 155 KDA; 1.
DR PANTHER; PTHR12802; SWI/SNF COMPLEX-RELATED; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR Pfam; PF04433; SWIRM; 1.
DR Pfam; PF16495; SWIRM-assoc_1; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 2.
DR PROSITE; PS50090; MYB_LIKE; 1.
DR PROSITE; PS51293; SANT; 1.
DR PROSITE; PS50934; SWIRM; 1.
DR PROSITE; PS50135; ZF_ZZ_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00228}.
FT DOMAIN 172..270
FT /note="SWIRM"
FT /evidence="ECO:0000259|PROSITE:PS50934"
FT DOMAIN 335..389
FT /note="ZZ-type"
FT /evidence="ECO:0000259|PROSITE:PS50135"
FT DOMAIN 390..440
FT /note="Myb-like"
FT /evidence="ECO:0000259|PROSITE:PS50090"
FT DOMAIN 393..444
FT /note="SANT"
FT /evidence="ECO:0000259|PROSITE:PS51293"
FT REGION 1..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 530..579
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 695..716
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 748..785
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 32..49
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 50..64
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 530..545
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 785 AA; 86444 MW; 9C5592DA2D785213 CRC64;
MPASPSENRT RWRKRKRDSQ ISRRHQKHEE DDDDDDENPN AEEDLAERDY DSEDQTHHNH
PNSQPHVETE VLSDHGVQIS QFPAVIKRSV NRPHSSVTAI VALERALESG ENKAPSALAA
PVLENVSHGQ LQALSSVPSD SFAFDGDSSF VITPPPILEG RGVVKRYGTK ALVVPMHSDW
FSPATVHRLE RQVVPHFFSG KSPDHTPEKY MECRNCIVAL HMEDPGKRIT VSDCKGLLAG
VNVEDLTRIV RFLDHWGIIN YCVRMPSHES PNAVSCLREE TSGEVRVPSE ALKSIDSLIK
FDKPNCKLKA DEIYSSLSAH SADVLDLEDR IREHLSENHC NYCSCPLPVV YYQSQKEVDI
LLCTDCFHDG RFVIGHSSID FVRVDSTRDY GELDGDSWTD QETLLLLEAM EIYNENWNEI
AEHVGTKSKA QCILHFLRLP MEDGKLENIN VPSMSLSSNA INRDHSGRLH CYSNGDTAGT
VHQTRDSDNR LPFANSGNPV MALVAFLASA VGPRVAASCA HAALAVLSED NSGSTSQMEA
PGHDNRTNSE NIHCRDGGPH GETAVSNNHN EDKAKVRGSW GLNEGRITPL SAEKVKDAAK
AGLSAAAMKA KLFADHEERE IQRLCANIVN HQLKRLELKL KQFAEIETLL MKECEQLERT
KQRCAADRSR IMSARLGTVG ATPTMNASGV GPSMASNGNN RQQMISASSS QPSVSGYGNN
QPVHPHMSFA PRPSMFGLGQ RLPLSMIQQS QPASSTAMFN APSNVQPTTN HPLLRSVSGT
NSGLG
//
