ID K7KQR1_SOYBN Unreviewed; 1035 AA.
AC K7KQR1;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 58.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100784581 {ECO:0000313|EnsemblPlants:KRH59206};
GN ORFNames=GLYMA_05G170800 {ECO:0000313|EMBL:KRH59206.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH59206};
RN [1] {ECO:0000313|EMBL:KRH59206.1, ECO:0000313|EnsemblPlants:KRH59206}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH59206};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH59206.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH59206}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH59206};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH59206.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH59206.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM000838; KRH59206.1; -; Genomic_DNA.
DR RefSeq; XP_006580235.1; XM_006580172.2.
DR AlphaFoldDB; K7KQR1; -.
DR EnsemblPlants; KRH59206; KRH59206; GLYMA_05G170800.
DR GeneID; 100784581; -.
DR Gramene; KRH59206; KRH59206; GLYMA_05G170800.
DR HOGENOM; CLU_000991_8_0_1; -.
DR OrthoDB; 1205686at2759; -.
DR Proteomes; UP000008827; Chromosome 5.
DR ExpressionAtlas; K7KQR1; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0032453; F:histone H3K4 demethylase activity; IEA:UniProt.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR GO; GO:0022414; P:reproductive process; IEA:UniProt.
DR GO; GO:0048731; P:system development; IEA:UniProt.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694:SF145; DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED; 1.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00542; FYRC; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 33..74
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 241..407
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 107..141
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 107..122
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1035 AA; 116570 MW; 0441FAC2F9E76778 CRC64;
MENTLESSGS PRHRKISARW DPDEACQPIV DEAPVFYPTI EEFEDTLGYI AKIRPQAEPY
GICRIVPPAC WVPPCPLQEK DLWENAKFPT RIQQIDLLQN REPMRKKIRG RKRKRRKQSK
MGMGMRTAKS GSEANVASEP EEKFGFQSGS DFTLKDFQQY ANVFKDCYFG LNDANEYEKV
SDSSHQQRWK PSVEEIEGEY WRIIEQPTDE VEVYYGADLE TGSLGSGFPK TSSLTKNESD
RYALSGWNLN NFPRLPGSAL CFEGSDISGV VVPWLYVGMC FSSFCWHVED HHLYSLNYLH
WGDPKVWYGV AGSHAPGLED AMRKHLPDLF EEQPNLLNEL VTQLSPSILK SEGVPVHRTI
QHSGEFVVTF PRAYHCGFNC GFNCAEAVNV APVDWLVHGQ NAAELYSLQC RKTSLSHDKL
LFGCAQEAMH ALAELTLHGK ENLKYIKWRS ACGKDGVLTK AVKTRITMEK ERLDCLPTHL
KMLRMDSKFD LFEERECFSC FYDLHLSAIG CKCSPDCYSC LKHSNLFCSC EMDNRFILFR
YTMNELSTLV EALEGESHAI EVWANRNSGM VSANAEDACI YKQDVESAIC QTQSYKEGKN
STCAGTNDKS NSTILSSSYS HISAELVHSE FHHETFSAPY GTKDCHKDNL NEKDLVMDNK
VMVEKGGSVD LNIDVMSGEP ENYFLHAADY HHNKGVPYVE KVSFAEARKE QDNMEPGADC
IAAKEFSSCS RDVQNSCTLD GYKLFGVDLQ MHSDSGEQLN SVSKIGDAET SNTSISLTNQ
SFLMQKFGIS VEPVNLGSVI CGKLWCSKHA IYPKGFKSRV KFFSILDPPR ICNYLSEVYD
AGFLGPIFKV TMEELPNEAF TNTSADKCWE SVLDRLNHEI KRQRSQGEIE LPSLELLQSI
NGHKMFGFLS PSIIQAIEAE DPNHQCVEYW NHKEVVSESS GSAIDDCKFS HGSSNSLGDA
KTKLFDAGLI RQEQDSIIGS YDSFEEMKLV LQGFLKKASS DELSAMHKLF SSDAQFTKCR
AEFVSLIEEI QKACA
//
