ID K7KZW9_SOYBN Unreviewed; 883 AA.
AC K7KZW9;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE RecName: Full=Pre-rRNA-processing protein RIX1 N-terminal domain-containing protein {ECO:0000259|Pfam:PF08167};
GN Name=100800871 {ECO:0000313|EnsemblPlants:KRH47956};
GN ORFNames=GLYMA_07G058700 {ECO:0000313|EMBL:KRH47956.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH47956.1};
RN [1] {ECO:0000313|EMBL:KRH47956.1, ECO:0000313|EnsemblPlants:KRH47956}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH47956};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH47956.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH47956}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH47956};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH47956.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH47956.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the RIX1/PELP1 family.
CC {ECO:0000256|ARBA:ARBA00010511}.
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DR EMBL; CM000840; KRH47956.1; -; Genomic_DNA.
DR RefSeq; XP_003529901.1; XM_003529853.3.
DR AlphaFoldDB; K7KZW9; -.
DR STRING; 3847.K7KZW9; -.
DR PaxDb; 3847-GLYMA07G06460-3; -.
DR EnsemblPlants; KRH47956; KRH47956; GLYMA_07G058700.
DR GeneID; 100800871; -.
DR Gramene; KRH47956; KRH47956; GLYMA_07G058700.
DR KEGG; gmx:100800871; -.
DR eggNOG; ENOG502QR0U; Eukaryota.
DR HOGENOM; CLU_015612_1_0_1; -.
DR InParanoid; K7KZW9; -.
DR OMA; DSCGQDM; -.
DR OrthoDB; 372185at2759; -.
DR Proteomes; UP000008827; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0006364; P:rRNA processing; IBA:GO_Central.
DR Gene3D; 1.25.10.10; Leucine-rich Repeat Variant; 1.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR012583; RIX1_N.
DR PANTHER; PTHR34105; PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1; 1.
DR PANTHER; PTHR34105:SF1; PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1; 1.
DR Pfam; PF08167; RIX1; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
PE 3: Inferred from homology;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repressor {ECO:0000256|ARBA:ARBA00022491}.
FT DOMAIN 23..220
FT /note="Pre-rRNA-processing protein RIX1 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF08167"
FT REGION 810..830
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 862..883
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 883 AA; 97691 MW; 93F1DCDD5881D820 CRC64;
MAAFDHFGNM YDVAFKPRLL QTLIRDHLPD EKRPFSNPSE LSKVVSLIKT HSLLSESFAD
STRPKLIEAW KSALASWLNL IYSLLSTTMP DKCWAGISLL GVTCEECSSE RFLESYSVWF
QKLLSFLQSP ADSHLVRVAA CASMSDLFAR LGGYPKIKKD SSSCAVKVVQ PTLKILNDEN
SEAIWDAAVH LLCTIITSFP FSIRNHYDSV ESAIALKLLS GGCSLDMSKK LAHCLTLLPK
SKGDEESWSV MMQKILVLIN DQLNLAFHGL EEETLRNEVT RLLVLPGKHP PPPLGGYILA
EKVLNKASKT SEQSLMSNAS RLMFGCCLLL KNSYPVKVNV PVRLLLGFVE RILMVNGSLP
QMSLPFMTAK QQENICSELP VLHLSSLELL TAIIKAMGSQ LLPHAAYIVR IITKYFKTCK
LPELRIKVYS VTRNLLITMG VGMALYLAQE VINNAFADLS IIEHKNSGIL NGSNSNASAG
ALLLPIHRKR KHSSTTGSLQ EHGEGGLSVE VPKNRPLTPV SLRIAALETL ESLITVAGAL
KSEPWRSKVD SLLLVTAMDS FKEGSVSEER SVFQQKEPAA TTTELQLAAL RALLVSLLSF
ARVRPPYLAQ GLELFRRGRQ QTGTKLAEFC AHALLTLEVL IHPRALPMVD YAYANNSSFG
EAHSNLQHGY FGWSHNTPYG LPQVPPDYDD DLCARWLEND NEVGESLDKN TKYTQEPSEA
CRASDPEVLF VHVSSDTNIQ ERIEMVSETA TCADVEMKTV EDETNFKSDQ PGESVVQFQE
TVSCTTNIPV VETRGDVADD KVSEKIVSDN SIPHNEASHM ESRHGSSVNK DFKFSSPSSS
LWHRTSGSNI FEEFAFQLEH DKALADEDDF PDIVDGDPDS DTE
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