ID K7LIW5_SOYBN Unreviewed; 1120 AA.
AC K7LIW5;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 24-JAN-2024, entry version 68.
DE RecName: Full=ubiquitinyl hydrolase 1 {ECO:0000256|ARBA:ARBA00012759};
DE EC=3.4.19.12 {ECO:0000256|ARBA:ARBA00012759};
GN ORFNames=GLYMA_10G120900 {ECO:0000313|EMBL:KRH33404.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH33404};
RN [1] {ECO:0000313|EMBL:KRH33404.1, ECO:0000313|EnsemblPlants:KRH33404}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH33404};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH33404.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH33404}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH33404};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH33404.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH33404.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Thiol-dependent hydrolysis of ester, thioester, amide, peptide
CC and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-
CC residue protein attached to proteins as an intracellular targeting
CC signal).; EC=3.4.19.12; Evidence={ECO:0000256|ARBA:ARBA00000707};
CC -!- SIMILARITY: Belongs to the peptidase C19 family.
CC {ECO:0000256|ARBA:ARBA00009085}.
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DR EMBL; CM000843; KRH33404.1; -; Genomic_DNA.
DR RefSeq; XP_006589035.1; XM_006588972.2.
DR AlphaFoldDB; K7LIW5; -.
DR MEROPS; C19.A73; -.
DR PaxDb; 3847-GLYMA10G23671-1; -.
DR EnsemblPlants; KRH33404; KRH33404; GLYMA_10G120900.
DR Gramene; KRH33404; KRH33404; GLYMA_10G120900.
DR eggNOG; KOG1863; Eukaryota.
DR HOGENOM; CLU_003532_0_1_1; -.
DR OMA; DTDWGFA; -.
DR Proteomes; UP000008827; Chromosome 10.
DR ExpressionAtlas; K7LIW5; baseline and differential.
DR GO; GO:0004843; F:cysteine-type deubiquitinase activity; IEA:UniProtKB-EC.
DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR CDD; cd00121; MATH; 1.
DR CDD; cd02659; peptidase_C19C; 1.
DR Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR InterPro; IPR002083; MATH/TRAF_dom.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR001394; Peptidase_C19_UCH.
DR InterPro; IPR008974; TRAF-like.
DR InterPro; IPR024729; USP7_ICP0-binding_dom.
DR InterPro; IPR029346; USP_C.
DR InterPro; IPR018200; USP_CS.
DR InterPro; IPR028889; USP_dom.
DR PANTHER; PTHR24006; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE; 1.
DR PANTHER; PTHR24006:SF644; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE K02C4.3-RELATED; 1.
DR Pfam; PF00917; MATH; 1.
DR Pfam; PF00443; UCH; 1.
DR Pfam; PF14533; USP7_C2; 1.
DR Pfam; PF12436; USP7_ICP0_bdg; 1.
DR SMART; SM00061; MATH; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR SUPFAM; SSF49599; TRAF domain-like; 1.
DR PROSITE; PS50144; MATH; 1.
DR PROSITE; PS00972; USP_1; 1.
DR PROSITE; PS50235; USP_3; 1.
PE 3: Inferred from homology;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Protease {ECO:0000256|ARBA:ARBA00022670};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Thiol protease {ECO:0000256|ARBA:ARBA00022807};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786}.
FT DOMAIN 60..184
FT /note="MATH"
FT /evidence="ECO:0000259|PROSITE:PS50144"
FT DOMAIN 203..527
FT /note="USP"
FT /evidence="ECO:0000259|PROSITE:PS50235"
FT REGION 1..54
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..19
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1120 AA; 130767 MW; D725F1C83262AAD1 CRC64;
MTLMTPPPMD QQQQQQEHDE MLVPRSDLPE GPQPMEAQAE IPSTVDAPTV DAPTVDDTPT
AKFTWTIDNF SSISQKLFSD IFCVGGYKWR ILIFPKGNGA GHLSMYIDVA DSATLPYGWS
RYAHFNLTVV NQIHSKYSIR KDSQHQFNAR ESDWGFINFM PLAELYDPAR GYLVNDTCIV
EADISVRKDM DWSYDSKKET GYVGLKNQGA TCYMNSLLQT LYHISYFRKA VYHMPTTEND
MPSVSIPLAL QSLFYKLQYS DTSVATKELT TSFGWDTYDS FMQHDVQELN RVLCEKLEGK
MKGTVVEGTI QQLFEGHHMN YIECINVDYK STRKESFYDL QLDVKGCKDV YASFDKYVEV
EQLEGDNKYH AEHYGLQDAR KGMLFIDFPP VLQLQLKRFE YDCTRDTMVK INDRYEFPLQ
LDLDMDNGKY LSPDADRSIR NFYTLHSVLV HSSGVHGGHY YAYIRPTLSN QWFKFDDERV
TKEESKRALE EQYGGEEELP CINPGFDHSP FRFTKHSNAY MLVYVRESDK DKIICNVDEK
DIAEHLRMRL KKEQDEKELK RKEKAEAHLY TTIKVACDED LREQIGNNIH FDLVDYDKVR
SFRVQINMPF MVFKEEVAKE FGIPIQYQRF WLWAKRQNNT YRPNRTLTPQ EEAQSVGLLR
EVSTKANNAA LKLFLELEMG QDLRPIPPPE KSKENLLLFL KLYEPSNEKL RYVGRLFVNS
SGKPEDILVK LNEMAGYDPD QDIDMFEEIK FVPNVMCERV DKKSTFRESQ LEDGDIICFQ
KSSPQTGSGE RYRYPDVPSF LEYVHNRLVV RFRTLEKPKE DEFSLELSKL DSYDNVVEEV
AQHIGLHDPS KIRLTSHNCY SQQPKAQSIK FRGMEHLTDM LIHSNQTSDI LYYEVLDIPL
PELQCLKTLK ITFHHATKDE VVIHTIRLPR HSTVSDVIND LKSKVDLSHP DAELRLLEVF
YHKIYKIFRV NEKIENINDQ YCALRAEEIP EEEKNLGSHD RLIHVYHFLK DTTQNQQVQN
FGHPFLLVIR EGETLAEVKL RIQKKLQVPD EEFSKWKFAF LSFGRPEYLQ DSDIVSTRFQ
RRDIYGAWEQ YLGLEHIDSA SKRSNTANQN RHEKAVKIYD
//