ID K7LVF4_SOYBN Unreviewed; 882 AA.
AC K7LVF4;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 71.
DE RecName: Full=E3 SUMO-protein ligase SIZ1 {ECO:0008006|Google:ProtNLM};
GN Name=100811996 {ECO:0000313|EnsemblPlants:KRH26382};
GN ORFNames=GLYMA_12G170900 {ECO:0000313|EMBL:KRH26382.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH26382};
RN [1] {ECO:0000313|EMBL:KRH26382.1, ECO:0000313|EnsemblPlants:KRH26382}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH26382};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH26382.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH26382}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH26382};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH26382.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH26382.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Protein modification; protein sumoylation.
CC {ECO:0000256|ARBA:ARBA00004718}.
CC -!- SIMILARITY: Belongs to the PIAS family.
CC {ECO:0000256|ARBA:ARBA00005383}.
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DR EMBL; CM000845; KRH26382.1; -; Genomic_DNA.
DR EMBL; CM000845; KRH26383.1; -; Genomic_DNA.
DR RefSeq; XP_003540164.1; XM_003540116.3.
DR RefSeq; XP_006592676.1; XM_006592613.2.
DR AlphaFoldDB; K7LVF4; -.
DR SMR; K7LVF4; -.
DR STRING; 3847.K7LVF4; -.
DR PaxDb; 3847-GLYMA12G29270-3; -.
DR EnsemblPlants; KRH26382; KRH26382; GLYMA_12G170900.
DR EnsemblPlants; KRH26383; KRH26383; GLYMA_12G170900.
DR GeneID; 100811996; -.
DR Gramene; KRH26382; KRH26382; GLYMA_12G170900.
DR Gramene; KRH26383; KRH26383; GLYMA_12G170900.
DR KEGG; gmx:100811996; -.
DR eggNOG; KOG2169; Eukaryota.
DR HOGENOM; CLU_015870_2_0_1; -.
DR InParanoid; K7LVF4; -.
DR OMA; WEVRRPN; -.
DR OrthoDB; 921278at2759; -.
DR UniPathway; UPA00886; -.
DR Proteomes; UP000008827; Chromosome 12.
DR ExpressionAtlas; K7LVF4; baseline and differential.
DR GO; GO:0061665; F:SUMO ligase activity; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0016925; P:protein sumoylation; IBA:GO_Central.
DR CDD; cd15570; PHD_Bye1p_SIZ1_like; 1.
DR CDD; cd16792; SP-RING_Siz-like; 1.
DR Gene3D; 1.10.720.30; SAP domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR003034; SAP_dom.
DR InterPro; IPR036361; SAP_dom_sf.
DR InterPro; IPR031141; SIZ1/2_SP-RING.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR004181; Znf_MIZ.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR10782:SF4; E3 SUMO-PROTEIN LIGASE SIZ1; 1.
DR PANTHER; PTHR10782; ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF02037; SAP; 1.
DR Pfam; PF02891; zf-MIZ; 1.
DR SMART; SM00249; PHD; 1.
DR SMART; SM00513; SAP; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF68906; SAP domain; 1.
DR PROSITE; PS50800; SAP; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS51044; ZF_SP_RING; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00452}.
FT DOMAIN 11..45
FT /note="SAP"
FT /evidence="ECO:0000259|PROSITE:PS50800"
FT DOMAIN 346..429
FT /note="SP-RING-type"
FT /evidence="ECO:0000259|PROSITE:PS51044"
FT REGION 541..567
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 734..754
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 829..882
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 882 AA; 96871 MW; 536D7215040BD408 CRC64;
MDWVASCKEK LQYFRLKELK DVLTHLGLSK QGKKQDLVDR ILAILSEDQV SKLWTKKNAV
GKQQVAKLVD ETYRKLQVSG AIDLSSKGQG ASDSSNGKIK GEIDNSFQSD TKIRCLCGNV
LDTEPLVKCE DTKCHVSQHI NCVIIPEKPM DGIPPVPDKF YCEICRLDRA DPFYVSATHL
LFPVKLTTTN IPTDGTNPVQ SVERTFQLTR ANKELVSKSE YDVQVWCMLL NDKVSFRMQW
PQFADLKVNG LPVRAINRPG SQLLGANGRD TGPVITPYTK DGINKISLTG CDARIFCLGV
RIVKRLSMPE VLSMIPEESD GERFEDALAR VCCCVGGGNA NDNADSDSDL EVVSDTFSIN
LRCPMSGSRM KIAGRFKPCV HIGCFDLEVF VEMNERSRKW QCPICVKNYA LENMIIDPYF
NRITTLMKNC GEEIAEVEVK PDGCWRVKAK NESERQELGT LAQWHHPDGS LIVSTDEVKS
MENLKLKQEG LSDSPIAGLK LGIRKNSNGV WEVSKPENTN TSSGNNRLNE DFENHEHVII
PMSSSDTGSG RDEDDPSINQ GGGEHIGYST TNGIEMNSVF NNNIDSAYGY TVNNASATMG
DAKIIILSDS EEDSDVLISH TPISGYRNNQ TSDAVDVYSV LQPGIIDPYT EDHNPGGNPT
LGVFNNPSED DFGMPPLWPL QSGTPAVSGF QLFSSEVEDV SDALIDLHHG NINCSSSLNG
YMLAPDTALG SSTLVPDSSA GRPDDDLNGG LVDNPLAFPR EDPSLQIFLP PKPAESSMQH
ELRDHADMSK GVFIEDWISL RLGGSTSGSN GDISTANGLN SRQQITPREN AGDSLTDAAP
LLPGMNDVRS EKASRQRSDI PFSFPRQKRS VRPRPNLPSD SE
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