ID K7M5B9_SOYBN Unreviewed; 1154 AA.
AC K7M5B9;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=XS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100790814 {ECO:0000313|EnsemblPlants:KRH15090};
GN ORFNames=GLYMA_14G068100 {ECO:0000313|EMBL:KRH15090.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH15090.1};
RN [1] {ECO:0000313|EMBL:KRH15090.1, ECO:0000313|EnsemblPlants:KRH15090}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH15090};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH15090.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH15090}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH15090};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH15090.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH15090.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000847; KRH15090.1; -; Genomic_DNA.
DR EMBL; CM000847; KRH15091.1; -; Genomic_DNA.
DR RefSeq; XP_003545257.1; XM_003545209.3.
DR RefSeq; XP_006595901.1; XM_006595838.2.
DR AlphaFoldDB; K7M5B9; -.
DR SMR; K7M5B9; -.
DR PaxDb; 3847-GLYMA14G07370-2; -.
DR EnsemblPlants; KRH15090; KRH15090; GLYMA_14G068100.
DR EnsemblPlants; KRH15091; KRH15091; GLYMA_14G068100.
DR GeneID; 100790814; -.
DR Gramene; KRH15090; KRH15090; GLYMA_14G068100.
DR Gramene; KRH15091; KRH15091; GLYMA_14G068100.
DR KEGG; gmx:100790814; -.
DR eggNOG; ENOG502QRE8; Eukaryota.
DR HOGENOM; CLU_010488_0_0_1; -.
DR InParanoid; K7M5B9; -.
DR OMA; KNDLMHM; -.
DR OrthoDB; 896244at2759; -.
DR Proteomes; UP000008827; Chromosome 14.
DR ExpressionAtlas; K7M5B9; baseline.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:InterPro.
DR CDD; cd12266; RRM_like_XS; 1.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR045177; FDM1-5/IDN2.
DR InterPro; IPR005379; FDM1-5/IDN2_XH.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR21596:SF65; PROTEIN INVOLVED IN DE NOVO 2-RELATED; 1.
DR PANTHER; PTHR21596; RIBONUCLEASE P SUBUNIT P38; 1.
DR Pfam; PF03469; XH; 1.
DR Pfam; PF03468; XS; 1.
DR Pfam; PF03470; zf-XS; 5.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 44..86
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 160..202
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 276..318
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 440..484
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 560..603
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 631..742
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 1020..1150
FT /note="Factor of DNA methylation 1-5/IDN2"
FT /evidence="ECO:0000259|Pfam:PF03469"
FT COILED 836..882
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 923..1014
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 1154 AA; 132641 MW; 2DEAB6D08CCE7D53 CRC64;
MAHCSNKDND PSASQLSWWY VDISYQELKK GSYKVMRSDE TFICPYCPER KQDYKYRELL
NHASGVGRSS SEKRSAKEKA NHLALVKYLE KDLAYMDGPS KPVDKGAKLL SPGETVMPHC
SNKDTDISAS QISWWYVDTS YEELKKGSHS VKTSDVTFIC PYCPRRKQDY LYRELLEHAY
MVGRSSSEKR SARERANHLA LVKYLENDLI IIMDGPSEPV DKGTKLSLGQ TVVAQCSNKE
TGMSASPINW WYVEKFYKEL KKGNHMVQTS DLTLCCPYCP KKRKQDYVYR ELLEHASGVG
QSSSEKRHVR EKATHLALMK YLKNDLKYLN DPSKSVNEGN PPVNRVHQIS SQERSVREDA
THLPSAKYFK KDLTNVSDPS SKPVNEGTIT GSPGETVIGC CSNKDSNISS SQIGRYAEKF
YEELKRGIHN VKTSDETFRC PYCSNKKINR DYVYREILEH ASGVGQSKSQ KRSFIEKANH
LALVKYLKKD LMNVGAPCPS KPMDQGTKTI SPGETVMGHY SHNDNNIRAS QISGWYVHKS
YEALKKGSHN VKTSEMTFSC PYCPNKKRKR DYVYREILEH ASGVGQSSSE KRSAIEKANH
LALMKYLEKD LMIVDGPPKT ADEGSPPFNF EKQFVWPWTG IVVNIPTRLT EEGCCVGESG
SKLRDEYRSR GFNPQRVRIL SNFCGHSGTA VVEFNKNWTG LDNALAFERA YELDHHGKKD
WFANTEHKSG IYAWIARADD YKVNNIIGEQ LQKMGDIKTI SELMEEEARM QDKLLSSLNN
TLQVKKKRLK EMEVKYYETS HRMDIVMGEI DKLTQGHNQE MKKIQSSATQ HFQNIFNGHE
RLKLQLESQK RELELRRIEL EKREARNESE RKKLEEEIME NALKNSSLDM AVLEQQKAGE
NVLKLAADQK RQKEQFHAKI ILLERQLEVK QKLELEIQQL KGKLNVMAYI EDDGDTEVLN
KVDALHKDLR EKEQSLRDLD SLNQTLIIKE RQSNDELQEA RKELINGIKE ISCRANVGVK
RMGELDIRPF LEAMKKKYND EDAEDRASEL CSLWEEYIKD PDWHPFKITM IEGKHQEIID
DDDEKLKGLK NEMGEGVYKA VVTALTEINT YNPSGRYITS ELWNYEEGKR ATLQEGVKLL
LMQWKLTKQK RGTM
//
