ID K7MVL5_SOYBN Unreviewed; 1088 AA.
AC K7MVL5;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 63.
DE RecName: Full=RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483};
DE EC=2.3.2.27 {ECO:0000256|ARBA:ARBA00012483};
GN Name=100820501 {ECO:0000313|EnsemblPlants:KRH01819};
GN ORFNames=GLYMA_18G300300 {ECO:0000313|EMBL:KRH01819.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH01819.1};
RN [1] {ECO:0000313|EMBL:KRH01819.1, ECO:0000313|EnsemblPlants:KRH01819}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH01819};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH01819.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH01819}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH01819};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH01819.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH01819.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC EC=2.3.2.27; Evidence={ECO:0000256|ARBA:ARBA00000900};
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC {ECO:0000256|ARBA:ARBA00004906}.
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DR EMBL; CM000851; KRH01819.1; -; Genomic_DNA.
DR RefSeq; XP_006603073.1; XM_006603010.2.
DR AlphaFoldDB; K7MVL5; -.
DR EnsemblPlants; KRH01819; KRH01819; GLYMA_18G300300.
DR GeneID; 100820501; -.
DR Gramene; KRH01819; KRH01819; GLYMA_18G300300.
DR HOGENOM; CLU_008502_0_0_1; -.
DR OMA; DSGTYQF; -.
DR OrthoDB; 1219578at2759; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000008827; Chromosome 18.
DR ExpressionAtlas; K7MVL5; baseline and differential.
DR GO; GO:0004842; F:ubiquitin-protein transferase activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0016567; P:protein ubiquitination; IEA:UniProtKB-UniPathway.
DR CDD; cd16664; RING-Ubox_PUB; 1.
DR Gene3D; 1.25.10.10; Leucine-rich Repeat Variant; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR045210; RING-Ubox_PUB.
DR InterPro; IPR003613; Ubox_domain.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR007527; Znf_SWIM.
DR PANTHER; PTHR35549; OS04G0584500 PROTEIN; 1.
DR PANTHER; PTHR35549:SF1; RING-TYPE E3 UBIQUITIN TRANSFERASE; 1.
DR Pfam; PF04564; U-box; 1.
DR SMART; SM00504; Ubox; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51698; U_BOX; 1.
DR PROSITE; PS50966; ZF_SWIM; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00325};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00325};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00325}.
FT DOMAIN 298..336
FT /note="SWIM-type"
FT /evidence="ECO:0000259|PROSITE:PS50966"
FT DOMAIN 611..686
FT /note="U-box"
FT /evidence="ECO:0000259|PROSITE:PS51698"
FT REGION 47..78
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 136..204
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 57..74
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 139..168
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 171..204
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1088 AA; 122308 MW; 86FFBA14C06D657A CRC64;
MASSLEELLA KEGFKGIRRV TRSRSSFHYG ASSEPLHSLD GRFSVSSERI RTQRTKSDAS
RYQISSGQLK TDNDTAMNRR SRDNLFLRDK MDQRLKNSSI DTDSGRGVDT NSSEYMPRNE
ITEVTEQEAN IVKDNCSTEV SSKRGKEKNF NELVEEENPV KDAKARSRSS SIHMLGHSSE
TRNNIKPQKD SYTRSNSSRN KDSNHAIQAA SSLALDEVAV QAVVSILNGY IKSFPKDADF
RSTLRHKCFS SLNFIELEEE NITGTKVIRS LEQAIEAIEQ TAEEPISTMY LKRTMMQLSI
ITGLSLNDLK YECTCGIPNF KLSACAHLYL SVVYMMQKKN KVSAKHLLQV FCDSPFQART
VLLPELWEHL FSSQFSHLKA WYSKQAEFLV DAPSKTRKLK LLQKVYNEHL DSGTHIFAVY
YKDWLTEGVE SPPTPSIGIP SASVMGSQEG SSLGYSFESA SSIDPLSPQP MVSKKLYDSM
FGSLSKPRVY QVKDIKDDDN IDNCMKDSYG STIVRQTLTY ESETVKFTDQ DIENFSQGVA
IDTIKPKGNS MTASEEWQKR NLSNDINNSF SMETNLNSHS IDALSHEKAS EPVLIKPNKT
CSSLEGPYFP SIPHEFICPL TGNLFEEPVT LETGQTFERE AIKAWFEKGN RTCPVTGNTL
ECVTMPFTNL ILKRLIDTWK SELFDYLIDL PSQTVENPEE LKLKKRDEAA VFKLESLFSS
LKEEDKSTYA KHLISLGFLP FLFRRFEQGN VEEKSHVMSL LLNCIQVDSG CIYQIATSVN
KKCLLELLHS KKATPTTNAI LFLTEILSMK RRKDVTSFIS GLAGEKVFNI MHILLMYLKK
SSPFEKPLIA VLLLHFDLLV EPQKFSIYRE VAVNAIAEAL DASLNDEKGR EKCCRALVIL
CSHFSSTGKI PTKTSILKQA GYNNDSLEVK PPGHEEEGQR LYVAISSEGE EKRGEELLKK
LLESLIGDGE SPFLKNISRC LDSKHLDLVR ACLITVTWLS SSLSMLFSAG LHLPAFLSII
SQLKGILENG ELELKTLASL SLLNFSKISE CKTLLKTMAE DIGPLLHELD DVTWTAKQLH
AIVSRENL
//
