ID L1N8A8_9BACT Unreviewed; 524 AA.
AC L1N8A8;
DT 06-MAR-2013, integrated into UniProtKB/TrEMBL.
DT 06-MAR-2013, sequence version 1.
DT 24-JAN-2024, entry version 35.
DE SubName: Full=S1 RNA binding domain protein {ECO:0000313|EMBL:EKX99494.1};
GN ORFNames=HMPREF9151_01691 {ECO:0000313|EMBL:EKX99494.1};
OS Hoylesella saccharolytica F0055.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae;
OC Hoylesella.
OX NCBI_TaxID=1127699 {ECO:0000313|EMBL:EKX99494.1, ECO:0000313|Proteomes:UP000010433};
RN [1] {ECO:0000313|EMBL:EKX99494.1, ECO:0000313|Proteomes:UP000010433}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=F0055 {ECO:0000313|EMBL:EKX99494.1,
RC ECO:0000313|Proteomes:UP000010433};
RA Weinstock G., Sodergren E., Lobos E.A., Fulton L., Fulton R., Courtney L.,
RA Fronick C., O'Laughlin M., Godfrey J., Wilson R.M., Miner T., Farmer C.,
RA Delehaunty K., Cordes M., Minx P., Tomlinson C., Chen J., Wollam A.,
RA Pepin K.H., Bhonagiri V., Zhang X., Suruliraj S., Warren W., Mitreva M.,
RA Mardis E.R., Wilson R.K.;
RL Submitted (MAY-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EKX99494.1}.
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DR EMBL; AMEP01000101; EKX99494.1; -; Genomic_DNA.
DR RefSeq; WP_009162995.1; NZ_KB291003.1.
DR AlphaFoldDB; L1N8A8; -.
DR STRING; 1127699.HMPREF9151_01691; -.
DR PATRIC; fig|1127699.3.peg.1560; -.
DR HOGENOM; CLU_003468_5_3_10; -.
DR OrthoDB; 9804278at2; -.
DR Proteomes; UP000010433; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0004540; F:RNA nuclease activity; IEA:InterPro.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd04453; S1_RNase_E; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 3.40.1260.20; Ribonuclease E, catalytic domain; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR019307; RNA-bd_AU-1/RNase_E/G.
DR InterPro; IPR004659; RNase_E/G.
DR InterPro; IPR003029; S1_domain.
DR NCBIfam; TIGR00757; RNaseEG; 1.
DR PANTHER; PTHR30001; RIBONUCLEASE; 1.
DR PANTHER; PTHR30001:SF0; RIBONUCLEASE G; 1.
DR Pfam; PF10150; RNase_E_G; 1.
DR SMART; SM00316; S1; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
PE 4: Predicted;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000010433};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
FT DOMAIN 37..141
FT /note="S1 motif"
FT /evidence="ECO:0000259|SMART:SM00316"
SQ SEQUENCE 524 AA; 60002 MW; A46A01F056067B3A CRC64;
MTSEVVIDVQ QKEISIALLE DKKLVEYQNE PREVSFSVGN VYVAKVKKLM PGLNASFVDV
GFERDAFLHY LDLGSQFDSY AKYLKQVQSD RKKLYPFAKA SRLPDLKKDG SVQNTLSVGQ
EVLVQIVKEP ISTKGPRLTC ELSFAGRYLI LIPFNDKVSV SSKIKSGEER ARLKQLIHSI
KPKNCGVIVR TVAEGKRVAE LDAELKTLTA CWENALEKVQ KTQKRPQLVF EETGRAVALL
RDLFNPTYEN IYVNDEDVFK EVKHYVSMIA PDKVNIVKLY DGKVPIFDNF NITKQIKSSF
GKAVNYKHGA YLIIEHTEAL HVVDVNSGNR IRSEKGQEAN ALDVNLGAAD ELARQLRLRD
MGGIIVVDFI DMNLAEDRQM LYERMCKNMQ SDRARHNILP LSKFGLMQIT RQRVRPAMDV
SVEETCPTCF GKGKIKSSIL FTDQLERKID RLVNKIGIKK FYLHVHPYVA AYIDRGLFSL
RRKWQLKYGL GVHIVSSQKL AFLQYEFYDR EKQFIDMKEE IETK
//
