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Database: UniProt
Entry: L8JDB3_9GAMM
LinkDB: L8JDB3_9GAMM
Original site: L8JDB3_9GAMM 
ID   L8JDB3_9GAMM            Unreviewed;       456 AA.
AC   L8JDB3;
DT   03-APR-2013, integrated into UniProtKB/TrEMBL.
DT   03-APR-2013, sequence version 1.
DT   24-JAN-2024, entry version 50.
DE   SubName: Full=Sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ELR66800.1};
GN   ORFNames=C942_04498 {ECO:0000313|EMBL:ELR66800.1};
OS   Photobacterium marinum.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC   Photobacterium.
OX   NCBI_TaxID=1056511 {ECO:0000313|EMBL:ELR66800.1, ECO:0000313|Proteomes:UP000011134};
RN   [1] {ECO:0000313|EMBL:ELR66800.1, ECO:0000313|Proteomes:UP000011134}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AK15 {ECO:0000313|EMBL:ELR66800.1,
RC   ECO:0000313|Proteomes:UP000011134};
RA   Khatri I., Vaidya B., Srinivas T.N.R., Subramanian S., Pinnaka A.;
RT   "Genome Assembly of Photobacterium sp. AK15.";
RL   Submitted (DEC-2012) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:ELR66800.1}.
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DR   EMBL; AMZO01000006; ELR66800.1; -; Genomic_DNA.
DR   RefSeq; WP_007463782.1; NZ_AMZO01000006.1.
DR   AlphaFoldDB; L8JDB3; -.
DR   PATRIC; fig|1056511.3.peg.1327; -.
DR   OrthoDB; 9804019at2; -.
DR   Proteomes; UP000011134; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd00009; AAA; 1.
DR   CDD; cd00130; PAS; 1.
DR   Gene3D; 1.10.8.60; -; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   NCBIfam; TIGR00229; sensory_box; 1.
DR   PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR   PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF13426; PAS_9; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00091; PAS; 1.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR   PROSITE; PS50112; PAS; 1.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          10..55
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          142..371
FT                   /note="Sigma-54 factor interaction"
FT                   /evidence="ECO:0000259|PROSITE:PS50045"
SQ   SEQUENCE   456 AA;  50379 MW;  B9C6AE125A6E5D34 CRC64;
     MEEHSNPLKL TEFTDSILES ISDGVFTVDN QWRISFFNRA AEGITGIPRN EALGKRCSEV
     FKSSMCEADC ALRQTLNNTT PIINKSCYII NAEGERIPVS VSTAVLKNSE GQVIGGAETF
     RDLSEVEALR NALKGRSQVG GFVSHSPLMR NLFELLPAVS ASSSNVLIQG ETGTGKELLA
     RAVHDMGPRA DKPFIAINCG ALPDNLLESE LFGYKKGAFT GATQDKPGRF ALAEGGTLFL
     DEIGEISPAL QVRLLRVLQE HSYEPLGAVK SEQSDVRIIA ATHKDLAAMV ANGEFRQDLY
     YRIHVVDLKL PPLRSRKEDI PLLVDQFVRN FNRLQNREVS GVSPEAISFL LDHDWPGNVR
     ELENVIERAF VLCPNGQIGP GYLPSELGAK AMPKDQPEAI GSARQLAEKQ SIQESLKRNR
     FNRAATAREL GIHKTTLYRK MKSLQIPFPK QNGRNR
//
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