ID M1B156_SOLTU Unreviewed; 688 AA.
AC M1B156;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 24-JAN-2024, entry version 52.
DE SubName: Full=Ubiquitin ligase protein cop1 {ECO:0000313|EnsemblPlants:PGSC0003DMT400034705};
GN Name=102605430 {ECO:0000313|EnsemblPlants:PGSC0003DMT400034705};
OS Solanum tuberosum (Potato).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum.
OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400034705, ECO:0000313|Proteomes:UP000011115};
RN [1] {ECO:0000313|Proteomes:UP000011115}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DM1-3 516 R44 {ECO:0000313|Proteomes:UP000011115};
RX PubMed=21743474; DOI=10.1038/nature10158;
RG The Potato Genome Sequencing Consortium;
RT "Genome sequence and analysis of the tuber crop potato.";
RL Nature 475:189-195(2011).
RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400034705}
RP IDENTIFICATION.
RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400034705};
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
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DR RefSeq; XP_015166404.1; XM_015310918.1.
DR AlphaFoldDB; M1B156; -.
DR EnsemblPlants; PGSC0003DMT400034705; PGSC0003DMT400034705; PGSC0003DMG400013334.
DR GeneID; 102605430; -.
DR Gramene; PGSC0003DMT400034705; PGSC0003DMT400034705; PGSC0003DMG400013334.
DR HOGENOM; CLU_006994_2_1_1; -.
DR OrthoDB; 21736at2759; -.
DR Proteomes; UP000011115; Unassembled WGS sequence.
DR ExpressionAtlas; M1B156; baseline.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0061630; F:ubiquitin protein ligase activity; IEA:InterPro.
DR CDD; cd16504; RING-HC_COP1; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR042755; COP1.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR44080; E3 UBIQUITIN-PROTEIN LIGASE COP1; 1.
DR PANTHER; PTHR44080:SF1; E3 UBIQUITIN-PROTEIN LIGASE COP1; 1.
DR Pfam; PF00400; WD40; 3.
DR Pfam; PF13923; zf-C3HC4_2; 1.
DR SMART; SM00184; RING; 1.
DR SMART; SM00320; WD40; 6.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 2.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000011115};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}; Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 63..101
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT REPEAT 472..514
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 558..598
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REGION 237..308
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 149..213
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 253..303
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 688 AA; 77302 MW; 707A470011A28B78 CRC64;
MGGGGERNSM GVLVPTVNAG ETSAPAGAET EAAVVGTEVV VVTERVAEEE EEEEEEVDKD
ILCPICMQII KDAFLTACGH SFCYMCIVTH LQNKSDCPCC SHYLTTNHLY PNFLLNKLLM
KKSARQMAKS ATPVEQLRQA IQQGCEVSVK ELDSLLSLLM DKKRKMEQEE AETNLQILLE
FLQCLKKQKV DELNEIQNDL QYIKEDINAV EKRRIELYRT RGRYSAKMRT LVDDSSAMTV
RPPLRDKGSG AIVSSPVNLQ EQGRAGTSQT RNTDTRAPQN PQIVQRKDDN QGGSDSQDPN
QPGKSLARKR RVHAQFNELQ DCYLQKRRYW ARQSQKQGER VANIMNRVGY SAGLEDFQSV
LSTFTRYSLR VVAELRHSDI FHSANIVSSI EFDRDDELFA TAGVSRRIKV FEFSSVVNEP
ADAQCPIVEM STRSKLSCLS WNNYTKNHLA SSDYEGIVTV WDVTTRQSVM EYEEHEKRAW
SVDFCRTEPS MLVSGSDDCK VKVWCTNQEA SVLTIDMKAN ICSVKYNPGS SAHIAVGSAD
HHVHYYDLRN ISQPLYIFSG HRKAVSYVKF LSNYELASAS TDSTLRLWDV NENVPLRTFK
GHTNEKNFVG LTVNSEYLAC GSETNEVFVY HKAISKPAAW HRFVSDDQND PDGDMGSFFI
SAVCWKRDSP TIVTANSQGT IKALVLAA
//
