ID M1BF79_SOLTU Unreviewed; 875 AA.
AC M1BF79;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400043799};
GN Name=102584933 {ECO:0000313|EnsemblPlants:PGSC0003DMT400043799};
OS Solanum tuberosum (Potato).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum.
OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400043799, ECO:0000313|Proteomes:UP000011115};
RN [1] {ECO:0000313|Proteomes:UP000011115}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DM1-3 516 R44 {ECO:0000313|Proteomes:UP000011115};
RX PubMed=21743474; DOI=10.1038/nature10158;
RG The Potato Genome Sequencing Consortium;
RT "Genome sequence and analysis of the tuber crop potato.";
RL Nature 475:189-195(2011).
RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400043799}
RP IDENTIFICATION.
RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400043799};
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR RefSeq; XP_015160755.1; XM_015305269.1.
DR AlphaFoldDB; M1BF79; -.
DR STRING; 4113.M1BF79; -.
DR PaxDb; 4113-PGSC0003DMT400043799; -.
DR EnsemblPlants; PGSC0003DMT400043799; PGSC0003DMT400043799; PGSC0003DMG400016997.
DR GeneID; 102584933; -.
DR Gramene; PGSC0003DMT400043799; PGSC0003DMT400043799; PGSC0003DMG400016997.
DR KEGG; sot:102584933; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_011727_0_0_1; -.
DR InParanoid; M1BF79; -.
DR OMA; PLWARKP; -.
DR OrthoDB; 1215391at2759; -.
DR Proteomes; UP000011115; Unassembled WGS sequence.
DR ExpressionAtlas; M1BF79; baseline.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd00590; RRM_SF; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 14.
DR PANTHER; PTHR47939; MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE; 1.
DR PANTHER; PTHR47939:SF1; OS04G0684500 PROTEIN; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 5.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF81901; HCP-like; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS51375; PPR; 14.
DR PROSITE; PS50102; RRM; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000011115};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 110..191
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REPEAT 240..274
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 275..309
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 310..344
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 380..414
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 415..449
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 450..484
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 485..519
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 520..554
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 555..589
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 590..624
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 625..659
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 660..694
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 695..729
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 730..764
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 28..52
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 72..92
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 839..875
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 28..43
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 77..92
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 839..855
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 875 AA; 99165 MW; 58948248651AF888 CRC64;
MDTIFSLSPS PPPFSAAIHT GNHHSTTVFS SLRKSSSSSP EKIPLPYTPK FTKKPLKHLL
NSTAPPSLSN KLWLSKKLSP PPPPTPPPTP PPFLAKNEEM QKRVENKEKG RIFVGNLPLW
IKEEEVAEFF RQFGAIKNVI LIKGNSGNEK NMGFGFLKYE GPIAEKAAMK AVEFDGVEFH
GRVLTVKLDD GRRLKEKIEE RNMWHEAMEG SGRDFKKVLE TQPENWQAVV WAFERIKKPS
RKEFGLMVNY YARRSDMHRA RETFEKMCAR GIEPTSHVYT NLIHAYAVGR DMEEALCCVR
KMKDEGIELS LVTYSILIGG FAKVGNIEAA ERWFEEAKKR DLTLNAIIYG NIIYANCQTF
NMDRAEELVR EMEEEDIDAP IDIYHTMMDG YTMIGNEEKC LIVFDRLKEC GFTPSVVSYG
CLMNLYIKIG KVSKAFEVSE MMKLAGIKHN MKTYSILMNG FINLKDWANA FAIFEDVIRD
GLKPDVVLYN NIIRAFCGMG NLDRALRIVE EMKKERHMPN SRTFMPIIHA FAKAGEVRRA
LDVFDMMRRS GCIPSVHTFN ALVLGLVEKR QMEKAVQILD DMLLAGVSPN EYTYTTIMHG
YASLGDIGKA CEYFSKVKNE GLELDIYTYE ALLKACCKSG RMQSALMVTK EMSAKSIPRN
TFVYNILIDG WARRGDVWEA ADLMQQMRQE GVPPDIHTFT SFINACCKAG DMQRAMRAVE
EMETVGIKPN LKTYTTLIHG WARASLPEKG LKCFEQMKQS GLKPDKAVYH CLMTSLLSRA
AFADQDYIIT GIQHVCEEMV ESGLTVDMGT AVHWSKCLRK IERTGGDITK SLQKTFPPDW
GSHRTLNATS NDNENEEGSD SGDDERSSFY EVKKC
//
