ID M1BN02_SOLTU Unreviewed; 387 AA.
AC M1BN02;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 24-JAN-2024, entry version 59.
DE SubName: Full=RNA binding protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400048896};
GN Name=102585899 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048896};
OS Solanum tuberosum (Potato).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum.
OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048896, ECO:0000313|Proteomes:UP000011115};
RN [1] {ECO:0000313|Proteomes:UP000011115}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DM1-3 516 R44 {ECO:0000313|Proteomes:UP000011115};
RX PubMed=21743474; DOI=10.1038/nature10158;
RG The Potato Genome Sequencing Consortium;
RT "Genome sequence and analysis of the tuber crop potato.";
RL Nature 475:189-195(2011).
RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400048896}
RP IDENTIFICATION.
RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400048896};
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR RefSeq; XP_006343487.1; XM_006343425.2.
DR AlphaFoldDB; M1BN02; -.
DR STRING; 4113.M1BN02; -.
DR PaxDb; 4113-PGSC0003DMT400048896; -.
DR EnsemblPlants; PGSC0003DMT400048896; PGSC0003DMT400048896; PGSC0003DMG400018999.
DR GeneID; 102585899; -.
DR Gramene; PGSC0003DMT400048896; PGSC0003DMT400048896; PGSC0003DMG400018999.
DR Gramene; RHC11H1G1463.2.1; RHC11H1G1463.2.1; RHC11H1G1463.2.
DR eggNOG; KOG1995; Eukaryota.
DR HOGENOM; CLU_025609_0_0_1; -.
DR InParanoid; M1BN02; -.
DR OMA; ACPMCAN; -.
DR OrthoDB; 162112at2759; -.
DR Proteomes; UP000011115; Unassembled WGS sequence.
DR ExpressionAtlas; M1BN02; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd12534; RRM_SARFH; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 4.10.1060.10; Zinc finger, RanBP2-type; 2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR001876; Znf_RanBP2.
DR InterPro; IPR036443; Znf_RanBP2_sf.
DR PANTHER; PTHR12999:SF17; ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2; 1.
DR PANTHER; PTHR12999; ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00641; zf-RanBP; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00547; ZnF_RBZ; 2.
DR SUPFAM; SSF90209; Ran binding protein zinc finger-like; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS01358; ZF_RANBP2_1; 2.
DR PROSITE; PS50199; ZF_RANBP2_2; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000011115};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00322}.
FT DOMAIN 13..99
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 152..183
FT /note="RanBP2-type"
FT /evidence="ECO:0000259|PROSITE:PS50199"
FT DOMAIN 219..248
FT /note="RanBP2-type"
FT /evidence="ECO:0000259|PROSITE:PS50199"
FT REGION 183..215
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 249..387
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 260..303
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 323..387
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 387 AA; 42783 MW; A3C2CC93F4D50FFF CRC64;
MASYSGKGSP LNGSVYVCNL PLGTDEDMLA EYFGTIGVLK KDKRSGRPKI WLYRDKVTNE
PKGDATVTYE DPHAALAAVE WFNNKDFHGS MIGVFIAESK NKDEASYVSV NQISEPNLDS
GLAVLDEVSN DIDGGGGSGR GRGDASAKAW QQDGDWLCPN TSCTNVNFAF RGVCNRCGTA
RPAGAGGGGG GAAGRGRGRG SQDPGAPGRA VGGPPGLFGP NDWACPMCAN INWAKRNKCN
ICNTNKPGHN EGGVRGGRAG GYKELDEEEI EETRRRRREA EEDDGEMYDE FGNLKKKFRA
KTQRAEAAQS LPPGVGRAGW EAEELGVAER DRKERSRERS RDYDDRERAR HRSRSRERDR
GRDRDRSYDY DRDREYGRDR ERNRYRH
//