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Database: UniProt
Entry: M1V632_CYAM1
LinkDB: M1V632_CYAM1
Original site: M1V632_CYAM1 
ID   M1V632_CYAM1            Unreviewed;      1250 AA.
AC   M1V632;
DT   01-MAY-2013, integrated into UniProtKB/TrEMBL.
DT   01-MAY-2013, sequence version 1.
DT   24-JAN-2024, entry version 48.
DE   SubName: Full=Probable tRNA splicing endonuclease positive effector Sen1p {ECO:0000313|EMBL:BAM81715.1};
GN   ORFNames=CYME_CMP054C {ECO:0000313|EMBL:BAM81715.1};
OS   Cyanidioschyzon merolae (strain NIES-3377 / 10D) (Unicellular red alga).
OC   Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae;
OC   Cyanidioschyzon.
OX   NCBI_TaxID=280699 {ECO:0000313|EMBL:BAM81715.1, ECO:0000313|Proteomes:UP000007014};
RN   [1] {ECO:0000313|EMBL:BAM81715.1, ECO:0000313|Proteomes:UP000007014}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=10D {ECO:0000313|EMBL:BAM81715.1,
RC   ECO:0000313|Proteomes:UP000007014};
RX   PubMed=15071595; DOI=10.1038/nature02398;
RA   Matsuzaki M., Misumi O., Shin-i T., Maruyama S., Takahara M.,
RA   Miyagishima S., Mori T., Nishida K., Yagisawa F., Nishida K., Yoshida Y.,
RA   Nishimura Y., Nakao S., Kobayashi T., Momoyama Y., Higashiyama T.,
RA   Minoda A., Sano M., Nomoto H., Oishi K., Hayashi H., Ohta F., Nishizaka S.,
RA   Haga S., Miura S., Morishita T., Kabeya Y., Terasawa K., Suzuki Y.,
RA   Ishii Y., Asakawa S., Takano H., Ohta N., Kuroiwa H., Tanaka K.,
RA   Shimizu N., Sugano S., Sato N., Nozaki H., Ogasawara N., Kohara Y.,
RA   Kuroiwa T.;
RT   "Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon
RT   merolae 10D.";
RL   Nature 428:653-657(2004).
RN   [2] {ECO:0000313|EMBL:BAM81715.1, ECO:0000313|Proteomes:UP000007014}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=10D {ECO:0000313|EMBL:BAM81715.1,
RC   ECO:0000313|Proteomes:UP000007014};
RX   PubMed=17623057; DOI=10.1186/1741-7007-5-28;
RA   Nozaki H., Takano H., Misumi O., Terasawa K., Matsuzaki M., Maruyama S.,
RA   Nishida K., Yagisawa F., Yoshida Y., Fujiwara T., Takio S., Tamura K.,
RA   Chung S.J., Nakamura S., Kuroiwa H., Tanaka K., Sato N., Kuroiwa T.;
RT   "A 100%-complete sequence reveals unusually simple genomic features in the
RT   hot-spring red alga Cyanidioschyzon merolae.";
RL   BMC Biol. 5:28-28(2007).
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DR   EMBL; AP006498; BAM81715.1; -; Genomic_DNA.
DR   RefSeq; XP_005537751.1; XM_005537694.1.
DR   AlphaFoldDB; M1V632; -.
DR   STRING; 280699.M1V632; -.
DR   EnsemblPlants; CMP054CT; CMP054CT; CMP054C.
DR   GeneID; 16995985; -.
DR   Gramene; CMP054CT; CMP054CT; CMP054C.
DR   KEGG; cme:CYME_CMP054C; -.
DR   eggNOG; KOG1801; Eukaryota.
DR   HOGENOM; CLU_265858_0_0_1; -.
DR   OrthoDB; 170190at2759; -.
DR   Proteomes; UP000007014; Chromosome 16.
DR   GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0004386; F:helicase activity; IEA:InterPro.
DR   CDD; cd18042; DEXXQc_SETX; 1.
DR   CDD; cd18808; SF1_C_Upf1; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   InterPro; IPR045055; DNA2/NAM7-like.
DR   InterPro; IPR041679; DNA2/NAM7-like_C.
DR   InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR047187; SF1_C_Upf1.
DR   PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR   PANTHER; PTHR10887:SF490; PROTEIN ZGRF1; 1.
DR   Pfam; PF13086; AAA_11; 2.
DR   Pfam; PF13087; AAA_12; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE   4: Predicted;
KW   Endonuclease {ECO:0000313|EMBL:BAM81715.1};
KW   Hydrolase {ECO:0000313|EMBL:BAM81715.1};
KW   Nuclease {ECO:0000313|EMBL:BAM81715.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007014}.
FT   DOMAIN          398..683
FT                   /note="DNA2/NAM7 helicase helicase"
FT                   /evidence="ECO:0000259|Pfam:PF13086"
FT   DOMAIN          711..766
FT                   /note="DNA2/NAM7 helicase helicase"
FT                   /evidence="ECO:0000259|Pfam:PF13086"
FT   DOMAIN          773..980
FT                   /note="DNA2/NAM7 helicase-like C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF13087"
FT   REGION          198..218
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          292..326
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          458..484
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1021..1075
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1205..1250
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        469..483
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1021..1051
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1250 AA;  135683 MW;  71FC6974865DF849 CRC64;
     MTENVSLPFF WFEGTFTLDQ EFPTERLRAA RGEAYRCKMP LGDSPVAATP ARTPSNASGH
     TADTVANTVS LFWYRLREQN TLPTAFISTT GAPFANVNVG MRAALDRILS SEPKNWPNSL
     TSVNAVAGAC KRSSEAENLP FRNPDEYIAF FTQLVDIEVC SELYNAFDSV LRTLSAALTP
     EKSGLVVLVS TRGDPVPVEP RGATKVSAEP VSTHDEPGSS ALVEVPIKIQ SKETIFDHDI
     LLLLPCTRED QRLTGAQLRE IRQQPLLGIV QHRAGSPLML RMQRARAEAW LEQQQQQQQQ
     QQRQWETART DCSSGPLNSA IGSENAACTP PTPAIRLMST LNHARELGAL SSIAEMELAP
     VILDPAGAAA EQQRELAPGP QRSELDAYLA VISNQRGLNR SQYEAVRASV HRQRGFALIH
     GPPGTGKTKT LLSLLNLLHM SKYQEYYDAY LSALGSPAAQ EEERPRTSCD QSTLPTAGTD
     STPKPILEQL LDSVRNTTAA ATAAVKLSAL RTARHTAALQ RKPRLLVTAQ SNAAVDEIVV
     RIMREGFVDG KLRTYYPDIV RIGAGARVHP KARAVTAEAR AEAFLQALES AKHSAEWIQH
     WEQQCRALLG QLETPAPPQH DLEARGRLMR LWDRLDRLQR DERRYRMATW PDQRISREQR
     IAWIAGTYLE EAEIVLCTLS GAALIKSWLR DAPLASEARS LPERSGESVS TLDGAFQARA
     STFPIVVIDE AAQATELATL IPLQYGCERC VLAGDPQQLP ATVFSRGDAG VALARSLMER
     LLQAGWTGHL LDTQYRMHPA IATFPTRWFY QNQLKNDDCV RSELYRPAFH RTGPPPPLLG
     PYCFVDIAEA TEERDATTAS LSNPKEAAFA MQLVEILYER YWKASDRVWH LGILTPYRAQ
     MRLLQQALDQ SGLILPGQQM PCTIEIDTVD AFQGREKDVI IFSAVRTAQH RSGIGFVGDV
     RRLNVALTRA KVSLVVLGHA AALRAHSADW DALLCDAEQR GLYFESSSDL VQSWLQRHRS
     SATASGSGSG AAGSIPPRPS STRSVSSDAM DTRDGAATPA AAASSQAPTS AARDSSTGAA
     STAAVAFASA LDPRLQRTAA VYSIRNGSDA PISGGVSGQS TPQVQAAAID ARSFMIASLT
     AGFSLPSVVA AAYQAFPHEA DQVAQLATEL AAQTGAVLAA MVTNAPQHAV ETVGRARRAC
     ARRKHKATGL RERTASKHGS VGNPLHQRHS GEGANGAASE AASTSTRSPR
//
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