GenomeNet

Database: UniProt
Entry: M4CNW9_BRARP
LinkDB: M4CNW9_BRARP
Original site: M4CNW9_BRARP 
ID   M4CNW9_BRARP            Unreviewed;       322 AA.
AC   M4CNW9;
DT   01-MAY-2013, integrated into UniProtKB/TrEMBL.
DT   01-MAY-2013, sequence version 1.
DT   13-NOV-2019, entry version 38.
DE   RecName: Full=Homeobox domain-containing protein {ECO:0000259|PROSITE:PS50071};
OS   Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica
OS   pekinensis).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae;
OC   Brassica.
OX   NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra005907.1-P, ECO:0000313|Proteomes:UP000011750};
RN   [1] {ECO:0000313|EnsemblPlants:Bra005907.1-P, ECO:0000313|Proteomes:UP000011750}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra005907.1-P,
RC   ECO:0000313|Proteomes:UP000011750};
RX   PubMed=21873998; DOI=10.1038/ng.919;
RG   Brassica rapa Genome Sequencing Project Consortium;
RA   Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H.,
RA   Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X.,
RA   Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B.,
RA   Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B.,
RA   Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C.,
RA   Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F.,
RA   Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H.,
RA   Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H.,
RA   Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J.,
RA   Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J.,
RA   Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M.,
RA   Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R.,
RA   Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S.,
RA   Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X.,
RA   Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y.,
RA   Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.;
RT   "The genome of the mesopolyploid crop species Brassica rapa.";
RL   Nat. Genet. 43:1035-1039(2011).
RN   [2] {ECO:0000313|EnsemblPlants:Bra005907.1-P}
RP   IDENTIFICATION.
RC   STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra005907.1-P};
RG   EnsemblPlants;
RL   Submitted (SEP-2019) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-
CC       ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
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DR   STRING; 3711.Bra005907.1-P; -.
DR   EnsemblPlants; Bra005907.1; Bra005907.1-P; Bra005907.
DR   Gramene; Bra005907.1; Bra005907.1-P; Bra005907.
DR   InParanoid; M4CNW9; -.
DR   OMA; RNNKRDM; -.
DR   Proteomes; UP000011750; Chromosome A03.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   CDD; cd00086; homeodomain; 1.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017970; Homeobox_CS.
DR   InterPro; IPR001356; Homeobox_dom.
DR   InterPro; IPR003106; Leu_zip_homeo.
DR   Pfam; PF02183; HALZ; 1.
DR   Pfam; PF00046; Homeodomain; 1.
DR   SMART; SM00340; HALZ; 1.
DR   SMART; SM00389; HOX; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   PROSITE; PS00027; HOMEOBOX_1; 1.
DR   PROSITE; PS50071; HOMEOBOX_2; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000011750};
KW   DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682};
KW   Homeobox {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682};
KW   Nucleus {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682};
KW   Reference proteome {ECO:0000313|Proteomes:UP000011750}.
FT   DOMAIN      168    228       Homeobox. {ECO:0000259|PROSITE:PS50071}.
FT   DNA_BIND    170    229       Homeobox. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00108}.
FT   REGION       15     37       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   REGION       52     90       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   REGION      144    173       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   COILED      234    264       {ECO:0000256|SAM:Coils}.
FT   COMPBIAS     76     90       Polar. {ECO:0000256|SAM:MobiDB-lite}.
SQ   SEQUENCE   322 AA;  36032 MW;  AB766F92DBDE7800 CRC64;
     MEPALYLGDN TNKFSFLEKP SKIPNNPSAS STSTSDKNIG FNMGLDVLGF GSQRSLSSSS
     SPSVEDEKKY KSKLTQRANY SDGVRVSSSV DPSLQLQLHL PWIPENRAPT VAEPSMPVSP
     PDSVTSSFRL DFGIKSYGYE KRNNKRDMED EVEKSTSRAS NEDNDDENGA IRKKLRLSKD
     QSAFLEDSFK EHNTLNPKQK IALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKKC
     CESLTDENRR LQKEVKELRA LKTSSPFYMQ RPATTLTMCP SCERVATSSS QPSTSAAHID
     LSTSSFHSPL IPVKPGPAKQ AS
//
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