GenomeNet

Database: UniProt
Entry: M4DID9_BRARP
LinkDB: M4DID9_BRARP
Original site: M4DID9_BRARP 
ID   M4DID9_BRARP            Unreviewed;       288 AA.
AC   M4DID9;
DT   01-MAY-2013, integrated into UniProtKB/TrEMBL.
DT   01-MAY-2013, sequence version 1.
DT   13-NOV-2019, entry version 43.
DE   RecName: Full=Homeobox domain-containing protein {ECO:0000259|PROSITE:PS50071};
OS   Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica
OS   pekinensis).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae;
OC   Brassica.
OX   NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra016266.1-P, ECO:0000313|Proteomes:UP000011750};
RN   [1] {ECO:0000313|EnsemblPlants:Bra016266.1-P, ECO:0000313|Proteomes:UP000011750}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016266.1-P,
RC   ECO:0000313|Proteomes:UP000011750};
RX   PubMed=21873998; DOI=10.1038/ng.919;
RG   Brassica rapa Genome Sequencing Project Consortium;
RA   Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H.,
RA   Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X.,
RA   Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B.,
RA   Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B.,
RA   Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C.,
RA   Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F.,
RA   Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H.,
RA   Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H.,
RA   Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J.,
RA   Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J.,
RA   Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M.,
RA   Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R.,
RA   Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S.,
RA   Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X.,
RA   Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y.,
RA   Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.;
RT   "The genome of the mesopolyploid crop species Brassica rapa.";
RL   Nat. Genet. 43:1035-1039(2011).
RN   [2] {ECO:0000313|EnsemblPlants:Bra016266.1-P}
RP   IDENTIFICATION.
RC   STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra016266.1-P};
RG   EnsemblPlants;
RL   Submitted (SEP-2019) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-
CC       ProRule:PRU00108, ECO:0000256|RuleBase:RU000682,
CC       ECO:0000256|SAAS:SAAS00868163}.
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DR   STRING; 3711.Bra016266.1-P; -.
DR   EnsemblPlants; Bra016266.1; Bra016266.1-P; Bra016266.
DR   Gramene; Bra016266.1; Bra016266.1-P; Bra016266.
DR   InParanoid; M4DID9; -.
DR   OMA; GCCDLET; -.
DR   Proteomes; UP000011750; Chromosome A07.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR   CDD; cd00086; homeodomain; 1.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017970; Homeobox_CS.
DR   InterPro; IPR001356; Homeobox_dom.
DR   InterPro; IPR000047; HTH_motif.
DR   InterPro; IPR003106; Leu_zip_homeo.
DR   Pfam; PF02183; HALZ; 1.
DR   Pfam; PF00046; Homeodomain; 1.
DR   PRINTS; PR00031; HTHREPRESSR.
DR   SMART; SM00389; HOX; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   PROSITE; PS00027; HOMEOBOX_1; 1.
DR   PROSITE; PS50071; HOMEOBOX_2; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000011750};
KW   DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00868168};
KW   Homeobox {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00868171};
KW   Nucleus {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00868176};
KW   Reference proteome {ECO:0000313|Proteomes:UP000011750}.
FT   DOMAIN       74    134       Homeobox. {ECO:0000259|PROSITE:PS50071}.
FT   DNA_BIND     76    135       Homeobox. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00108}.
FT   REGION      182    201       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   COILED      126    174       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   288 AA;  32493 MW;  C8E93A2A22DEA030 CRC64;
     MSCNNGMSFF PSNFMIQTSY EDDHPHQAPS LAPLLPSCSI PQDLHGFASF LGKRSPIEVG
     NNMNGEEDYS DDGSHMGEKK RRLNMEQVKT LEKTFELGNK LEPEMKMQLA RALGLQPRQI
     AIWFQNRRAR WKTKQLEKDY DTLKQQFDAL KADNELLQTH NQKLQAEIMG LKNKEQIESI
     NLNKETEGSC SNRSDNSSDN LRLDISTALP SVDSTITGGH PPAPQTVGRH FFPPSPAAAT
     TTTTTMQFFQ NSSSGQSMVK EENSISNMLC AMDDHSGFWP WLDQQQYN
//
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