GenomeNet

Database: UniProt
Entry: M4E7B0_BRARP
LinkDB: M4E7B0_BRARP
Original site: M4E7B0_BRARP 
ID   M4E7B0_BRARP            Unreviewed;       186 AA.
AC   M4E7B0;
DT   01-MAY-2013, integrated into UniProtKB/TrEMBL.
DT   01-MAY-2013, sequence version 1.
DT   13-NOV-2019, entry version 40.
DE   RecName: Full=Homeobox domain-containing protein {ECO:0000259|PROSITE:PS50071};
OS   Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica
OS   pekinensis).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae;
OC   Brassica.
OX   NCBI_TaxID=51351 {ECO:0000313|EnsemblPlants:Bra024665.1-P, ECO:0000313|Proteomes:UP000011750};
RN   [1] {ECO:0000313|EnsemblPlants:Bra024665.1-P, ECO:0000313|Proteomes:UP000011750}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024665.1-P,
RC   ECO:0000313|Proteomes:UP000011750};
RX   PubMed=21873998; DOI=10.1038/ng.919;
RG   Brassica rapa Genome Sequencing Project Consortium;
RA   Wang X., Wang H., Wang J., Sun R., Wu J., Liu S., Bai Y., Mun J.H.,
RA   Bancroft I., Cheng F., Huang S., Li X., Hua W., Wang J., Wang X.,
RA   Freeling M., Pires J.C., Paterson A.H., Chalhoub B., Wang B.,
RA   Hayward A., Sharpe A.G., Park B.S., Weisshaar B., Liu B., Li B.,
RA   Liu B., Tong C., Song C., Duran C., Peng C., Geng C., Koh C., Lin C.,
RA   Edwards D., Mu D., Shen D., Soumpourou E., Li F., Fraser F.,
RA   Conant G., Lassalle G., King G.J., Bonnema G., Tang H., Wang H.,
RA   Belcram H., Zhou H., Hirakawa H., Abe H., Guo H., Wang H., Jin H.,
RA   Parkin I.A., Batley J., Kim J.S., Just J., Li J., Xu J., Deng J.,
RA   Kim J.A., Li J., Yu J., Meng J., Wang J., Min J., Poulain J., Wang J.,
RA   Hatakeyama K., Wu K., Wang L., Fang L., Trick M., Links M.G., Zhao M.,
RA   Jin M., Ramchiary N., Drou N., Berkman P.J., Cai Q., Huang Q., Li R.,
RA   Tabata S., Cheng S., Zhang S., Zhang S., Huang S., Sato S., Sun S.,
RA   Kwon S.J., Choi S.R., Lee T.H., Fan W., Zhao X., Tan X., Xu X.,
RA   Wang Y., Qiu Y., Yin Y., Li Y., Du Y., Liao Y., Lim Y., Narusaka Y.,
RA   Wang Y., Wang Z., Li Z., Wang Z., Xiong Z., Zhang Z.;
RT   "The genome of the mesopolyploid crop species Brassica rapa.";
RL   Nat. Genet. 43:1035-1039(2011).
RN   [2] {ECO:0000313|EnsemblPlants:Bra024665.1-P}
RP   IDENTIFICATION.
RC   STRAIN=cv. Chiifu-401-42 {ECO:0000313|EnsemblPlants:Bra024665.1-P};
RG   EnsemblPlants;
RL   Submitted (SEP-2019) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-
CC       ProRule:PRU00108, ECO:0000256|RuleBase:RU000682,
CC       ECO:0000256|SAAS:SAAS00868163}.
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DR   STRING; 3711.Bra024665.1-P; -.
DR   EnsemblPlants; Bra024665.1; Bra024665.1-P; Bra024665.
DR   Gramene; Bra024665.1; Bra024665.1-P; Bra024665.
DR   InParanoid; M4E7B0; -.
DR   OMA; DILFRQN; -.
DR   Proteomes; UP000011750; Chromosome A09.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR   CDD; cd00086; homeodomain; 1.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR017970; Homeobox_CS.
DR   InterPro; IPR001356; Homeobox_dom.
DR   InterPro; IPR000047; HTH_motif.
DR   InterPro; IPR003106; Leu_zip_homeo.
DR   Pfam; PF02183; HALZ; 1.
DR   Pfam; PF00046; Homeodomain; 1.
DR   PRINTS; PR00031; HTHREPRESSR.
DR   SMART; SM00389; HOX; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   PROSITE; PS00027; HOMEOBOX_1; 1.
DR   PROSITE; PS50071; HOMEOBOX_2; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000011750};
KW   DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00868168};
KW   Homeobox {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00868171};
KW   Nucleus {ECO:0000256|PROSITE-ProRule:PRU00108,
KW   ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00868176};
KW   Reference proteome {ECO:0000313|Proteomes:UP000011750}.
FT   DOMAIN       20     80       Homeobox. {ECO:0000259|PROSITE:PS50071}.
FT   DNA_BIND     22     81       Homeobox. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00108}.
FT   REGION      132    159       Disordered. {ECO:0000256|SAM:MobiDB-
FT                                lite}.
FT   COILED       93    127       {ECO:0000256|SAM:Coils}.
FT   COMPBIAS    143    159       Polar. {ECO:0000256|SAM:MobiDB-lite}.
SQ   SEQUENCE   186 AA;  21553 MW;  9ECC82633BBB8426 CRC64;
     MSNTETNTVD EDDVCESYKM RETTKKRKLT PIQLCLLEES FEEDKRLEPD RKLWLAEKLG
     LQPTQVAVWF QNRRARFKTR QLELDCDSLK ASYAKLKTDR DILFRQNQAL ENKVALLKEK
     LQFQEKLETQ SMEAEKLGEE GSSVKSDNTQ YTEEEEGLGS NQYSFPELAA LGFYYDPTMS
     ASNLGL
//
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