ID M5J5L3_9LACO Unreviewed; 468 AA.
AC M5J5L3;
DT 29-MAY-2013, integrated into UniProtKB/TrEMBL.
DT 29-MAY-2013, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE RecName: Full=ErfK/YbiS/YcfS/YnhG family protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=D271_00045 {ECO:0000313|EMBL:EKW99771.1};
OS Ligilactobacillus saerimneri 30a.
OC Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae;
OC Ligilactobacillus.
OX NCBI_TaxID=1227363 {ECO:0000313|EMBL:EKW99771.1, ECO:0000313|Proteomes:UP000011912};
RN [1] {ECO:0000313|EMBL:EKW99771.1, ECO:0000313|Proteomes:UP000011912}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=30a {ECO:0000313|EMBL:EKW99771.1,
RC ECO:0000313|Proteomes:UP000011912};
RX PubMed=23405290;
RA Romano A., Trip H., Campbell-Sills H., Bouchez O., Sherman D.,
RA Lolkema J.S., Lucas P.M.;
RT "Genome Sequence of Lactobacillus saerimneri 30a (Formerly Lactobacillus
RT sp. Strain 30a), a Reference Lactic Acid Bacterium Strain Producing
RT Biogenic Amines.";
RL Genome Announc. 1:E00097-E00012(2013).
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EKW99771.1}.
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DR EMBL; ANAG01000001; EKW99771.1; -; Genomic_DNA.
DR RefSeq; WP_009550711.1; NZ_ANAG01000001.1.
DR AlphaFoldDB; M5J5L3; -.
DR STRING; 1227363.D271_00045; -.
DR GeneID; 80985926; -.
DR PATRIC; fig|1227363.6.peg.8; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000011912; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 3.10.20.800; -; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR InterPro; IPR038054; LD_TPept-like_central_sf.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR InterPro; IPR022029; YoaR-like_PG-bd.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF2; SLL0670 PROTEIN; 1.
DR Pfam; PF12229; PG_binding_4; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF143985; L,D-transpeptidase pre-catalytic domain-like; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils}; Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000011912};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 12..32
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 205..315
FT /note="YoaR-like putative peptidoglycan binding"
FT /evidence="ECO:0000259|Pfam:PF12229"
FT DOMAIN 343..467
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
FT COILED 132..159
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 468 AA; 53012 MW; 0DF24616FF5E11F7 CRC64;
MKRTHRKQTR SNIWVLLVAL VIIVIGIGGF VMNRHQRTHF NRSVKINGID VGGLTADEAL
ARLKKVQWSN QVYVGQTLIV TGKTTSAHIS QADLPALEKI MQQQYSFFPH KVNHNYHLQP
QQKNSYRENV LRQALQTKLE QLNQKRNPAQ DAYAQLVNNK VTVVPARKGN QYNVAKIMQE
YDHQLYQATI RLKKKIVQPV TATSATVKRQ QRKLDKLVDR QVEYTVVDKK HTITVADAFS
KVTYHNGKYD YDDVPLRKLI TKINNEQGTL HKRYDFTTPG GSTITVQNES YGWELSTTKA
RKTLSQALLT GKKQVDGRQD IYGLGYNTGG LGYGLDNNGL GKTYAVISIA EQRAWLYRDG
QMVQSFRVVT GNQATHEDTP TGVYYIMYKQ SPSVLRGYAA NRGKYEQKVS YWAQFTDSGC
GFHDAGWRKD WSPKAYLNHG SGGCANTQPA EMAKAYGNLV QNEPVIVY
//
