ID M5X1C3_PRUPE Unreviewed; 533 AA.
AC M5X1C3;
DT 29-MAY-2013, integrated into UniProtKB/TrEMBL.
DT 29-MAY-2013, sequence version 1.
DT 24-JAN-2024, entry version 53.
DE RecName: Full=KOW domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=PRUPE_2G047200 {ECO:0000313|EMBL:ONI21039.1};
OS Prunus persica (Peach) (Amygdalus persica).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus.
OX NCBI_TaxID=3760 {ECO:0000313|EMBL:ONI21039.1, ECO:0000313|Proteomes:UP000006882};
RN [1] {ECO:0000313|EMBL:ONI21039.1, ECO:0000313|Proteomes:UP000006882}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882};
RX PubMed=23525075; DOI=10.1038/ng.2586;
RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F.,
RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A.,
RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V.,
RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., Dondini L.,
RA Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., Aramini V., Copetti D.,
RA Gonzalez S., Horner D.S., Falchi R., Lucas S., Mica E., Maldonado J.,
RA Lazzari B., Bielenberg D., Pirona R., Miculan M., Barakat A., Testolin R.,
RA Stella A., Tartarini S., Tonutti P., Arus P., Orellana A., Wells C.,
RA Main D., Vizzotto G., Silva H., Salamini F., Schmutz J., Morgante M.,
RA Rokhsar D.S.;
RT "The high-quality draft genome of peach (Prunus persica) identifies unique
RT patterns of genetic diversity, domestication and genome evolution.";
RL Nat. Genet. 45:487-494(2013).
CC -!- SIMILARITY: Belongs to the SPT5 family.
CC {ECO:0000256|ARBA:ARBA00006956}.
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DR EMBL; CM007652; ONI21039.1; -; Genomic_DNA.
DR RefSeq; XP_007218678.1; XM_007218616.1.
DR AlphaFoldDB; M5X1C3; -.
DR STRING; 3760.M5X1C3; -.
DR EnsemblPlants; ONI21039; ONI21039; PRUPE_2G047200.
DR GeneID; 18787073; -.
DR Gramene; ONI21039; ONI21039; PRUPE_2G047200.
DR KEGG; pper:18787073; -.
DR eggNOG; KOG1999; Eukaryota.
DR HOGENOM; CLU_511329_0_0_1; -.
DR OMA; EKEVAIC; -.
DR OrthoDB; 827306at2759; -.
DR Proteomes; UP000006882; Chromosome g2.
DR GO; GO:0032044; C:DSIF complex; IBA:GO_Central.
DR GO; GO:0005840; C:ribosome; IEA:InterPro.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0032784; P:regulation of DNA-templated transcription elongation; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006368; P:transcription elongation by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0140673; P:transcription elongation-coupled chromatin remodeling; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd06081; KOW_Spt5_1; 1.
DR CDD; cd06082; KOW_Spt5_2; 1.
DR CDD; cd06083; KOW_Spt5_3; 1.
DR CDD; cd09888; NGN_Euk; 1.
DR Gene3D; 2.30.30.30; -; 3.
DR Gene3D; 3.30.70.940; NusG, N-terminal domain; 1.
DR InterPro; IPR005824; KOW.
DR InterPro; IPR041973; KOW_Spt5_1.
DR InterPro; IPR041975; KOW_Spt5_2.
DR InterPro; IPR041976; KOW_Spt5_3.
DR InterPro; IPR005100; NGN-domain.
DR InterPro; IPR006645; NGN-like_dom.
DR InterPro; IPR036735; NGN_dom_sf.
DR InterPro; IPR039385; NGN_Euk.
DR InterPro; IPR014722; Rib_uL2_dom2.
DR InterPro; IPR005825; Ribosomal_uL24_CS.
DR InterPro; IPR039659; SPT5.
DR InterPro; IPR022581; Spt5_N.
DR InterPro; IPR008991; Translation_prot_SH3-like_sf.
DR PANTHER; PTHR11125; SUPPRESSOR OF TY 5; 1.
DR PANTHER; PTHR11125:SF7; TRANSCRIPTION ELONGATION FACTOR SPT5; 1.
DR Pfam; PF03439; Spt5-NGN; 1.
DR Pfam; PF11942; Spt5_N; 1.
DR SMART; SM00739; KOW; 3.
DR SMART; SM00738; NGN; 1.
DR SUPFAM; SSF50104; Translation proteins SH3-like domain; 1.
DR PROSITE; PS01108; RIBOSOMAL_L24; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006882};
KW Transcription {ECO:0000256|ARBA:ARBA00023163}.
FT DOMAIN 167..253
FT /note="NusG-like N-terminal"
FT /evidence="ECO:0000259|SMART:SM00738"
FT DOMAIN 258..285
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT DOMAIN 406..433
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT DOMAIN 458..485
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
SQ SEQUENCE 533 AA; 60857 MW; D9ED6DCC2AF7EA24 CRC64;
MARHRDEDDY EPDQVLDGDE EEEHEEEQGG QISRQKRRRS DFRDDDEAYG GGVSRKRRNK
RPIGSKFFDI EAEVDNDEEE EEEDEGEDDF IVDTGADLPE EEHDGRRMHR HRPLRPQEDE
QEEDVEALER RIQARYARSS PSRAEYDEEE TTDLVVNQQA LLPCVRDPKL WMVKCAIGRE
REAVVCLMQK YIDKPKLNIK SAVALDHLKS FIYIEADNEA HVREACKGLR NILALHKVNR
VPIGEMTDVL SVESKAIDVS RGTWVRMKMG TYKGDLAKVV GVDDVRQRVR VKLIPRIDLQ
AIANKLEGRQ VVKKKAFVPP PRFMNIDEAK QLHIRVERRR DPVTGDYFES IDGMLFKDGF
LYKAVSMKSI SSQNIRPTLD ELEKFRKPGE NGARLSTLFS NRKKGPFVKG DTVIVVKGDL
KNLKGWVEKV EGEIVHIRPE IKQLPKTLAL NEKELCKYFE PGNHVKVVSG TLEGATGMVV
KVEQHVLIIL SDITKEHIPV FADDVVESSE VTSASCYSDA GASTRLSKST WAR
//
