ID M5X7Q3_PRUPE Unreviewed; 641 AA.
AC M5X7Q3;
DT 29-MAY-2013, integrated into UniProtKB/TrEMBL.
DT 29-MAY-2013, sequence version 1.
DT 24-JAN-2024, entry version 47.
DE RecName: Full=XS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=PRUPE_2G236900 {ECO:0000313|EMBL:ONI24375.1};
OS Prunus persica (Peach) (Amygdalus persica).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus.
OX NCBI_TaxID=3760 {ECO:0000313|EMBL:ONI24375.1, ECO:0000313|Proteomes:UP000006882};
RN [1] {ECO:0000313|EMBL:ONI24375.1, ECO:0000313|Proteomes:UP000006882}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882};
RX PubMed=23525075; DOI=10.1038/ng.2586;
RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F.,
RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A.,
RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V.,
RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., Dondini L.,
RA Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., Aramini V., Copetti D.,
RA Gonzalez S., Horner D.S., Falchi R., Lucas S., Mica E., Maldonado J.,
RA Lazzari B., Bielenberg D., Pirona R., Miculan M., Barakat A., Testolin R.,
RA Stella A., Tartarini S., Tonutti P., Arus P., Orellana A., Wells C.,
RA Main D., Vizzotto G., Silva H., Salamini F., Schmutz J., Morgante M.,
RA Rokhsar D.S.;
RT "The high-quality draft genome of peach (Prunus persica) identifies unique
RT patterns of genetic diversity, domestication and genome evolution.";
RL Nat. Genet. 45:487-494(2013).
RN [2] {ECO:0000313|EMBL:ONI24375.1}
RP NUCLEOTIDE SEQUENCE.
RA Verde I., Jenkins J., Dondini L., Micali S., Pagliarani G., Vendramin E.,
RA Paris R., Aramini V., Gazza L., Rossini L., Bassi D., Troggio M., Shu S.,
RA Grimwood J.H., Tartarini S., Dettori M.T., Schmutz J.;
RT "WGS assembly of Prunus persica.";
RL Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM007652; ONI24375.1; -; Genomic_DNA.
DR EMBL; CM007652; ONI24376.1; -; Genomic_DNA.
DR RefSeq; XP_007220898.1; XM_007220836.1.
DR AlphaFoldDB; M5X7Q3; -.
DR STRING; 3760.M5X7Q3; -.
DR EnsemblPlants; ONI24375; ONI24375; PRUPE_2G236900.
DR EnsemblPlants; ONI24376; ONI24376; PRUPE_2G236900.
DR GeneID; 18787130; -.
DR Gramene; ONI24375; ONI24375; PRUPE_2G236900.
DR Gramene; ONI24376; ONI24376; PRUPE_2G236900.
DR KEGG; pper:18787130; -.
DR eggNOG; ENOG502QRE8; Eukaryota.
DR HOGENOM; CLU_021775_1_1_1; -.
DR OMA; RIFNDHE; -.
DR OrthoDB; 1112799at2759; -.
DR Proteomes; UP000006882; Chromosome g2.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:InterPro.
DR CDD; cd12266; RRM_like_XS; 1.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR045177; FDM1-5/IDN2.
DR InterPro; IPR005379; FDM1-5/IDN2_XH.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR21596:SF65; PROTEIN INVOLVED IN DE NOVO 2-RELATED; 1.
DR PANTHER; PTHR21596; RIBONUCLEASE P SUBUNIT P38; 1.
DR Pfam; PF03469; XH; 1.
DR Pfam; PF03468; XS; 1.
DR Pfam; PF03470; zf-XS; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000006882};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 47..90
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 119..230
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 508..638
FT /note="Factor of DNA methylation 1-5/IDN2"
FT /evidence="ECO:0000259|Pfam:PF03469"
FT REGION 1..45
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 94..113
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 331..502
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 7..28
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 641 AA; 74198 MW; 530E2BFF84D320B8 CRC64;
MGSVEDPIFE DDTDISDTEM DEDEEEYYED LKNGKHSVRS SDGTYICPFC PKKKKRDFVL
KDLLQHASGV GKSNSEKRST EEKAKHSALA KYLEKDLATE GGPSKPVGEE DPPIDCDHDE
KLVWPWTGVV VNIPTRRADD GRYVGESGSK LRDDLKRRGF NPTRVHPLWN FRGHSGSAVV
EFRKDWPGYV NAMSFERAYE ADRHGKKDWG ANGDQKSGLY AWVARADDYK ATNIVGEHLR
KIGDLKTISE IMEEEARKQD KLVFNLNNII QGKNKDMEEM ELKCSETTNS IKSVITEKEK
LVQGYNEDIK KIQMSARDHF QRIFSDHEKL KLQLETQKIG LETRIEEMEK RAVANESESR
KLADEIEKNS AKNSSLQLAS MEQLKANENL LKLAEDQKRQ KEELHSKIIK LEKQLDTKQT
LELEIEQLRG NLNVVRRMGD DGDVEVLEKV DTMLKELREK EETFEDLEAL NQTLIVKERK
SNDELQEARK ELVNGLKEIS NRAHIGVKRM GELDSKPFQE AMKRKYNEEE AEEKATELCS
LWEEYLKDPD WHPFRVTTVD GQHKEFINEQ DEKLKDLKKQ LGDEVYNAVT SALKEINEYN
PSGRYITSEL WNYAEGRRAS LQEGVDFILK QWKQKKQRME D
//