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Database: UniProt
Entry: M7N791_9BACT
LinkDB: M7N791_9BACT
Original site: M7N791_9BACT 
ID   M7N791_9BACT            Unreviewed;       287 AA.
AC   M7N791;
DT   29-MAY-2013, integrated into UniProtKB/TrEMBL.
DT   29-MAY-2013, sequence version 1.
DT   24-JAN-2024, entry version 43.
DE   SubName: Full=RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:EMR04483.1};
GN   Name=rpoD_1 {ECO:0000313|EMBL:EMR04483.1};
GN   ORFNames=ADICEAN_00381 {ECO:0000313|EMBL:EMR04483.1};
OS   Cesiribacter andamanensis AMV16.
OC   Bacteria; Bacteroidota; Cytophagia; Cytophagales; Cesiribacteraceae;
OC   Cesiribacter.
OX   NCBI_TaxID=1279009 {ECO:0000313|EMBL:EMR04483.1, ECO:0000313|Proteomes:UP000011910};
RN   [1] {ECO:0000313|EMBL:EMR04483.1, ECO:0000313|Proteomes:UP000011910}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AMV16 {ECO:0000313|EMBL:EMR04483.1,
RC   ECO:0000313|Proteomes:UP000011910};
RX   PubMed=23682146;
RA   Shivaji S., Ara S., Begum Z., Srinivas T.N., Singh A., Kumar Pinnaka A.;
RT   "Draft Genome Sequence of Cesiribacter andamanensis Strain AMV16T, Isolated
RT   from a Soil Sample from a Mud Volcano in the Andaman Islands, India.";
RL   Genome Announc. 1:E00240-13(2013).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EMR04483.1}.
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DR   EMBL; AODQ01000005; EMR04483.1; -; Genomic_DNA.
DR   RefSeq; WP_009193790.1; NZ_AODQ01000005.1.
DR   AlphaFoldDB; M7N791; -.
DR   STRING; 1279009.ADICEAN_00381; -.
DR   PATRIC; fig|1279009.4.peg.382; -.
DR   eggNOG; COG0568; Bacteria.
DR   OrthoDB; 9809557at2; -.
DR   Proteomes; UP000011910; Unassembled WGS sequence.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   CDD; cd06171; Sigma70_r4; 1.
DR   Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 2.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   NCBIfam; TIGR02937; sigma70-ECF; 1.
DR   PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR   PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC; 1.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Reference proteome {ECO:0000313|Proteomes:UP000011910};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          17..48
FT                   /note="RNA polymerase sigma-70 region 1.2"
FT                   /evidence="ECO:0000259|Pfam:PF00140"
FT   DOMAIN          56..123
FT                   /note="RNA polymerase sigma-70 region 2"
FT                   /evidence="ECO:0000259|Pfam:PF04542"
FT   DOMAIN          135..207
FT                   /note="RNA polymerase sigma-70 region 3"
FT                   /evidence="ECO:0000259|Pfam:PF04539"
FT   DOMAIN          222..275
FT                   /note="RNA polymerase sigma-70 region 4"
FT                   /evidence="ECO:0000259|Pfam:PF04545"
SQ   SEQUENCE   287 AA;  32948 MW;  BEC2DD7C958B27B5 CRC64;
     MRQLKISKQI TNRESQSLDK YLQEIGKVDL LTPDEEVELA KRIRQGDQMA LEKLTKANLR
     FVVSVAKQYQ NQGLSLGDLI NEGNLGLIKA AQRFDETRGF KFISYAVWWI RQSILQALAE
     QSRIVRLPLN RVGSLNKISK TFSELEQKYE REPSPEELAE SLEVSTNEVV DTMRISGRHV
     SMDAPFVQGE ENSLLDVLEN DSEETPDAEL MNDSLRREVQ RALSTLTQRE ADVIALYFGL
     NGEHSMTLEE IGEKFNLTRE RVRQIKEKAI RRLRHTSRSK ALKPYLG
//
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