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Database: UniProt
Entry: MAD20_ORYSJ
LinkDB: MAD20_ORYSJ
Original site: MAD20_ORYSJ 
ID   MAD20_ORYSJ             Reviewed;         233 AA.
AC   Q2QQA3; Q0IN73; Q84L55;
DT   04-APR-2006, integrated into UniProtKB/Swiss-Prot.
DT   04-APR-2006, sequence version 2.
DT   27-MAR-2024, entry version 108.
DE   RecName: Full=MADS-box transcription factor 20;
DE   AltName: Full=OsMADS20;
GN   Name=MADS20; OrderedLocusNames=Os12g0501700, LOC_Os12g31748;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC   STRAIN=cv. Dongjin; TISSUE=Flower;
RX   PubMed=14701936; DOI=10.1093/pcp/pcg156;
RA   Lee S., Kim J., Son J.-S., Nam J., Jeong D.-H., Lee K., Jang S., Yoo J.,
RA   Lee J., Lee D.-Y., Kang H.-G., An G.;
RT   "Systematic reverse genetic screening of T-DNA tagged genes in rice for
RT   functional genomic analyses: MADS-box genes as a test case.";
RL   Plant Cell Physiol. 44:1403-1411(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
CC   -!- FUNCTION: Probable transcription factor.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC   -!- TISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots.
CC       {ECO:0000269|PubMed:14701936}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=ABA98632.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AY250075; AAO92341.1; -; mRNA.
DR   EMBL; DP000011; ABA98632.2; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP008218; BAF29842.1; -; Genomic_DNA.
DR   EMBL; AP014968; BAT17255.1; -; Genomic_DNA.
DR   RefSeq; XP_015619865.1; XM_015764379.1.
DR   AlphaFoldDB; Q2QQA3; -.
DR   SMR; Q2QQA3; -.
DR   STRING; 39947.Q2QQA3; -.
DR   PaxDb; 39947-Q2QQA3; -.
DR   EnsemblPlants; Os12t0501700-00; Os12t0501700-00; Os12g0501700.
DR   GeneID; 4352275; -.
DR   Gramene; Os12t0501700-00; Os12t0501700-00; Os12g0501700.
DR   KEGG; osa:4352275; -.
DR   eggNOG; KOG0014; Eukaryota.
DR   HOGENOM; CLU_053053_0_2_1; -.
DR   InParanoid; Q2QQA3; -.
DR   OMA; SMSYDHI; -.
DR   OrthoDB; 410816at2759; -.
DR   Proteomes; UP000000763; Chromosome 12.
DR   Proteomes; UP000059680; Chromosome 12.
DR   Genevisible; Q2QQA3; OS.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   CDD; cd00265; MADS_MEF2_like; 1.
DR   Gene3D; 3.40.1810.10; Transcription factor, MADS-box; 1.
DR   InterPro; IPR033896; MADS_MEF2-like.
DR   InterPro; IPR002487; TF_Kbox.
DR   InterPro; IPR002100; TF_MADSbox.
DR   InterPro; IPR036879; TF_MADSbox_sf.
DR   PANTHER; PTHR48019:SF79; MADS-BOX TRANSCRIPTION FACTOR MADS-MC; 1.
DR   PANTHER; PTHR48019; SERUM RESPONSE FACTOR HOMOLOG; 1.
DR   Pfam; PF01486; K-box; 1.
DR   Pfam; PF00319; SRF-TF; 1.
DR   PRINTS; PR00404; MADSDOMAIN.
DR   SMART; SM00432; MADS; 1.
DR   SUPFAM; SSF55455; SRF-like; 1.
DR   PROSITE; PS51297; K_BOX; 1.
DR   PROSITE; PS50066; MADS_BOX_2; 1.
PE   2: Evidence at transcript level;
KW   DNA-binding; Nucleus; Reference proteome; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..233
FT                   /note="MADS-box transcription factor 20"
FT                   /id="PRO_0000229902"
FT   DOMAIN          1..61
FT                   /note="MADS-box"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT   DOMAIN          91..184
FT                   /note="K-box"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT   CONFLICT        95
FT                   /note="S -> R (in Ref. 1; AAO92341)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        104
FT                   /note="R -> K (in Ref. 1; AAO92341)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        133
FT                   /note="N -> D (in Ref. 1; AAO92341)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        170
FT                   /note="C -> S (in Ref. 1; AAO92341)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        177
FT                   /note="K -> E (in Ref. 1; AAO92341)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        186
FT                   /note="T -> I (in Ref. 1; AAO92341)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   233 AA;  26120 MW;  E6FC17A07066E7A0 CRC64;
     MGRGKVQVRR IENEVSRQVT FSKRRPGLLK KAHEIAVLCD VDVAAIVFSA KGNLFHYASS
     HTTMERILEK YDRHELLSEG NNVIEEFPEL EGSMSYDHIK LRGRIEALKK SQRNLMGQEL
     DSLTLQDIQQ LENQIDTSLN NIRSRKEKLL MEKNTILEKK ITELETLHTC IRASPTKAAA
     PPACNTADAF VPNLNICCGD SGEPETVTAP LGWTSSNNGL PWWMLQSSSN GKS
//
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