ID NFYC6_ARATH Reviewed; 202 AA.
AC Q9FGP7;
DT 20-DEC-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 24-JAN-2024, entry version 130.
DE RecName: Full=Nuclear transcription factor Y subunit C-6;
DE Short=AtNF-YC-6;
GN Name=NFYC6; OrderedLocusNames=At5g50480; ORFNames=MBA10.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP TISSUE SPECIFICITY.
RX PubMed=11250072; DOI=10.1016/s0378-1119(01)00323-7;
RA Gusmaroli G., Tonelli C., Mantovani R.;
RT "Regulation of the CCAAT-binding NF-Y subunits in Arabidopsis thaliana.";
RL Gene 264:173-185(2001).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=11867211; DOI=10.1016/s0378-1119(01)00833-2;
RA Gusmaroli G., Tonelli C., Mantovani R.;
RT "Regulation of novel members of the Arabidopsis thaliana CCAAT-binding
RT nuclear factor Y subunits.";
RL Gene 283:41-48(2002).
CC -!- FUNCTION: Stimulates the transcription of various genes by recognizing
CC and binding to a CCAAT motif in promoters. {ECO:0000250}.
CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three
CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and
CC dimerize for NF-YA association and DNA binding (By similarity).
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in flowers and siliques.
CC {ECO:0000269|PubMed:11250072}.
CC -!- SIMILARITY: Belongs to the NFYC/HAP5 subunit family. {ECO:0000305}.
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DR EMBL; AB025619; BAB09133.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95950.1; -; Genomic_DNA.
DR EMBL; BT014783; AAT41766.1; -; mRNA.
DR EMBL; BT015006; AAT70457.1; -; mRNA.
DR RefSeq; NP_199859.1; NM_124430.3.
DR AlphaFoldDB; Q9FGP7; -.
DR SMR; Q9FGP7; -.
DR BioGRID; 20362; 18.
DR IntAct; Q9FGP7; 2.
DR STRING; 3702.Q9FGP7; -.
DR PaxDb; 3702-AT5G50480-1; -.
DR EnsemblPlants; AT5G50480.1; AT5G50480.1; AT5G50480.
DR GeneID; 835116; -.
DR Gramene; AT5G50480.1; AT5G50480.1; AT5G50480.
DR KEGG; ath:AT5G50480; -.
DR Araport; AT5G50480; -.
DR TAIR; AT5G50480; NF-YC6.
DR eggNOG; KOG1657; Eukaryota.
DR HOGENOM; CLU_045277_0_2_1; -.
DR InParanoid; Q9FGP7; -.
DR OMA; ACEMFIV; -.
DR OrthoDB; 37770at2759; -.
DR PhylomeDB; Q9FGP7; -.
DR PRO; PR:Q9FGP7; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FGP7; baseline and differential.
DR Genevisible; Q9FGP7; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR007125; Histone_H2A/H2B/H3.
DR PANTHER; PTHR10252; HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED; 1.
DR PANTHER; PTHR10252:SF39; NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-6; 1.
DR Pfam; PF00125; Histone; 1.
DR SUPFAM; SSF47113; Histone-fold; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..202
FT /note="Nuclear transcription factor Y subunit C-6"
FT /id="PRO_0000218255"
FT REGION 1..29
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 180..202
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 202 AA; 22010 MW; BEBA6928C86E3897 CRC64;
MAENNNNNGD NMNNDNHQQP PSYSQLPPMA SSNPQLRNYW IEQMETVSDF KNRQLPLARI
KKIMKADPDV HMVSAEAPII FAKACEMFIV DLTMRSWLKA EENKRHTLQK SDISNAVASS
FTYDFLLDVV PKDESIATAD PGFVAMPHPD GGGVPQYYYP PGVVMGTPMV GSGMYAPSQA
WPAAAGDGED DAEDNGGNGG GN
//
