ID YVDT_BACSU Reviewed; 194 AA.
AC O07001; Q795H5;
DT 20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1997, sequence version 1.
DT 27-MAR-2024, entry version 139.
DE RecName: Full=Uncharacterized HTH-type transcriptional regulator YvdT;
GN Name=yvdT; OrderedLocusNames=BSU34480;
OS Bacillus subtilis (strain 168).
OC Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RA Denizot F.;
RL Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [3]
RP REVIEW, AND GENE FAMILY.
RX PubMed=15944459; DOI=10.1128/mmbr.69.2.326-356.2005;
RA Ramos J.L., Martinez-Bueno M., Molina-Henares A.J., Teran W., Watanabe K.,
RA Zhang X., Gallegos M.T., Brennan R., Tobes R.;
RT "The TetR family of transcriptional repressors.";
RL Microbiol. Mol. Biol. Rev. 69:326-356(2005).
RN [4]
RP X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS).
RA Su X.-D., Yu Y.-M., Nan J.;
RT "Crystal structure of yvdT from Bacillus subtilis.";
RL Submitted (NOV-2006) to the PDB data bank.
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DR EMBL; Z94043; CAB08049.1; -; Genomic_DNA.
DR EMBL; AL009126; CAB15453.1; -; Genomic_DNA.
DR PIR; C70035; C70035.
DR RefSeq; NP_391328.1; NC_000964.3.
DR RefSeq; WP_003244443.1; NZ_JNCM01000033.1.
DR PDB; 2F07; X-ray; 2.30 A; A/B=1-194.
DR PDBsum; 2F07; -.
DR AlphaFoldDB; O07001; -.
DR SMR; O07001; -.
DR STRING; 224308.BSU34480; -.
DR PaxDb; 224308-BSU34480; -.
DR EnsemblBacteria; CAB15453; CAB15453; BSU_34480.
DR GeneID; 936423; -.
DR KEGG; bsu:BSU34480; -.
DR PATRIC; fig|224308.179.peg.3735; -.
DR eggNOG; COG1309; Bacteria.
DR InParanoid; O07001; -.
DR PhylomeDB; O07001; -.
DR BioCyc; BSUB:BSU34480-MONOMER; -.
DR EvolutionaryTrace; O07001; -.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR Gene3D; 1.10.357.10; Tetracycline Repressor, domain 2; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001647; HTH_TetR.
DR InterPro; IPR036271; Tet_transcr_reg_TetR-rel_C_sf.
DR InterPro; IPR041603; YvdT_C.
DR PANTHER; PTHR43479; ACREF/ENVCD OPERON REPRESSOR-RELATED; 1.
DR PANTHER; PTHR43479:SF8; TRANSCRIPTIONAL REGULATOR, TETR FAMILY; 1.
DR Pfam; PF17934; TetR_C_26; 1.
DR Pfam; PF00440; TetR_N; 1.
DR PRINTS; PR00455; HTHTETR.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF48498; Tetracyclin repressor-like, C-terminal domain; 1.
DR PROSITE; PS50977; HTH_TETR_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure; DNA-binding; Reference proteome; Repressor; Transcription;
KW Transcription regulation.
FT CHAIN 1..194
FT /note="Uncharacterized HTH-type transcriptional regulator
FT YvdT"
FT /id="PRO_0000360524"
FT DOMAIN 6..66
FT /note="HTH tetR-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00335"
FT DNA_BIND 29..48
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00335"
FT HELIX 8..23
FT /evidence="ECO:0007829|PDB:2F07"
FT TURN 25..27
FT /evidence="ECO:0007829|PDB:2F07"
FT HELIX 30..37
FT /evidence="ECO:0007829|PDB:2F07"
FT HELIX 41..47
FT /evidence="ECO:0007829|PDB:2F07"
FT STRAND 49..51
FT /evidence="ECO:0007829|PDB:2F07"
FT HELIX 54..72
FT /evidence="ECO:0007829|PDB:2F07"
FT HELIX 80..111
FT /evidence="ECO:0007829|PDB:2F07"
FT HELIX 115..138
FT /evidence="ECO:0007829|PDB:2F07"
FT HELIX 148..167
FT /evidence="ECO:0007829|PDB:2F07"
FT HELIX 176..191
FT /evidence="ECO:0007829|PDB:2F07"
SQ SEQUENCE 194 AA; 22227 MW; 0F5CD6A0780BAF39 CRC64;
MPKQTSGKYE KILQAAIEVI SEKGLDKASI SDIVKKAGTA QGTFYLYFSS KNALIPAIAE
NLLTHTLDQI KGRLHGDEDF WTVLDILIDE TFLITERHKD IIVLCYSGLA IDHSMEKWET
IYQPYYSWLE KIINKAIANH EVTEGINSKW TARTIINLVE NTAERFYIGF EQDENVEVYK
KEIFTFLKRS LGTA
//
