ID PIN1B_ORYSJ Reviewed; 554 AA.
AC P0C0X5; D5A7I6; Q2RAU7;
DT 10-JAN-2006, integrated into UniProtKB/Swiss-Prot.
DT 10-JAN-2006, sequence version 1.
DT 24-JAN-2024, entry version 100.
DE RecName: Full=Probable auxin efflux carrier component 1b {ECO:0000305};
DE Short=OsPIN1b {ECO:0000303|PubMed:16085936};
DE AltName: Full=OsPIN1c {ECO:0000303|PubMed:19825657};
GN Name=PIN1B {ECO:0000303|PubMed:16085936};
GN OrderedLocusNames=Os11g0137000 {ECO:0000312|EMBL:BAT12573.1},
GN LOC_Os11g04190 {ECO:0000305};
GN ORFNames=OsJ_32878 {ECO:0000312|EMBL:EEE51610.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP IDENTIFICATION, AND TISSUE SPECIFICITY.
RX DOI=10.1016/j.plantsci.2010.02.018;
RA Miyashita Y., Takasugi T., Ito Y.;
RT "Identification and expression analysis of PIN genes in rice.";
RL Plant Sci. 178:424-428(2010).
RN [8]
RP NOMENCLATURE.
RX PubMed=16085936; DOI=10.1093/pcp/pci183;
RA Xu M., Zhu L., Shou H., Wu P.;
RT "A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root
RT emergence and tillering in rice.";
RL Plant Cell Physiol. 46:1674-1681(2005).
RN [9]
RP TISSUE SPECIFICITY.
RX PubMed=19825657; DOI=10.1093/mp/ssp023;
RA Wang J.R., Hu H., Wang G.H., Li J., Chen J.Y., Wu P.;
RT "Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and
RT regulation by hormones.";
RL Mol. Plant 2:823-831(2009).
CC -!- FUNCTION: May act as a component of the auxin efflux carrier.
CC {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed in roots and shoot apex (Ref.7).
CC Expressed in roots, stem bases, stems, leaves and young panicles
CC (PubMed:19825657). {ECO:0000269|PubMed:19825657, ECO:0000269|Ref.7}.
CC -!- SIMILARITY: Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
CC {ECO:0000305}.
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DR EMBL; DP000010; ABA91350.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF27538.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT12573.1; -; Genomic_DNA.
DR EMBL; CM000148; EEE51610.1; -; Genomic_DNA.
DR EMBL; AK103181; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; BR000828; FAA00677.1; -; Genomic_DNA.
DR RefSeq; XP_015616014.1; XM_015760528.1.
DR AlphaFoldDB; P0C0X5; -.
DR SMR; P0C0X5; -.
DR STRING; 39947.P0C0X5; -.
DR TCDB; 2.A.69.1.9; the auxin efflux carrier (aec) family.
DR GlyCosmos; P0C0X5; 2 sites, No reported glycans.
DR PaxDb; 39947-P0C0X5; -.
DR EnsemblPlants; Os11t0137000-01; Os11t0137000-01; Os11g0137000.
DR GeneID; 4349716; -.
DR Gramene; Os11t0137000-01; Os11t0137000-01; Os11g0137000.
DR KEGG; osa:4349716; -.
DR eggNOG; ENOG502QS61; Eukaryota.
DR HOGENOM; CLU_019285_1_1_1; -.
DR InParanoid; P0C0X5; -.
DR OMA; ADHCDAK; -.
DR OrthoDB; 405852at2759; -.
DR PlantReactome; R-OSA-5608118; Auxin signalling.
DR PlantReactome; R-OSA-8858053; Polar auxin transport.
DR PlantReactome; R-OSA-9639861; Development of root hair.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000007752; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Genevisible; P0C0X5; OS.
DR GO; GO:0005783; C:endoplasmic reticulum; IBA:GO_Central.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0010329; F:auxin efflux transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0010315; P:auxin export across the plasma membrane; IBA:GO_Central.
DR GO; GO:0009926; P:auxin polar transport; IBA:GO_Central.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR InterPro; IPR014024; Auxin_eff_plant.
DR InterPro; IPR004776; Mem_transp_PIN-like.
DR NCBIfam; TIGR00946; 2a69; 1.
DR PANTHER; PTHR31752; AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED; 1.
DR PANTHER; PTHR31752:SF66; AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED; 1.
DR Pfam; PF03547; Mem_trans; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Glycoprotein; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix; Transport.
FT CHAIN 1..554
FT /note="Probable auxin efflux carrier component 1b"
FT /id="PRO_0000123789"
FT TRANSMEM 7..27
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 39..59
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 69..89
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 101..121
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 136..156
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 415..435
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 439..459
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 476..496
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 499..519
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 534..554
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 214..240
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 275..298
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 352..385
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 217..240
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 357..375
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 243
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 369
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CONFLICT 479
FT /note="R -> G (in Ref. 6; AK103181)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 554 AA; 59270 MW; 7041229FF10F1986 CRC64;
MITVVDLYHV LTAVVPLYVA MTLAYASVRW WRIFSPDQCS GINRFVALFA VPLLSFHFIS
TNNPFAMNLR FLAADTLQKL IVLALLALWC RLSARGSLDW LITLFSLSTL PNTLVMGIPL
LKGMYAAAAD VDSGSLMVQI VVLQCIIWYT LMLFLFEYRG ARLLVMEQFP DTAASIVSFR
VDSDVVSLAG GGGGAAELQA EAEVGDDGRM RVTVRKSTSS RSEAACSHGT QSHSQSMQPR
VSNLSGVEIY SLQSSRNPTP RGSSFNHAEF FNIVGNGKQG DEEKGAAGGG GHSPQPVVGK
RKDLHMFVWS SSASPVSERA AAAAAGAVHV FGGGGADHGD AKGAQAYDEY SFGNKNEKDG
PTLSKLGSNS TAQLRPKDDG EGMAAAMPPA SVMTRLILIM VWRKLIRNPN TYSSLLGVIW
SLVSYRWGIE MPAIIARSIS ILSDAGLGMA MFSLGLFMAL QPRIIACGNS LASYAMAVRF
LVGPAVMAAA SIAVGLRGVL LHIAIVQAAL PQGIVPFVFA KEYNVHPNIL STAVIFGMLI
ALPITLVYYI LLGL
//
