ID PP259_ARATH Reviewed; 504 AA.
AC Q9LJJ1;
DT 16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 27-MAR-2024, entry version 109.
DE RecName: Full=Putative pentatricopeptide repeat-containing protein At3g28640;
GN Name=PCMP-E79; OrderedLocusNames=At3g28640; ORFNames=MZN14.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AP000420; BAB02180.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77469.1; -; Genomic_DNA.
DR RefSeq; NP_189505.2; NM_113784.2.
DR AlphaFoldDB; Q9LJJ1; -.
DR SMR; Q9LJJ1; -.
DR STRING; 3702.Q9LJJ1; -.
DR PaxDb; 3702-AT3G28640-1; -.
DR ProteomicsDB; 249189; -.
DR EnsemblPlants; AT3G28640.1; AT3G28640.1; AT3G28640.
DR GeneID; 822494; -.
DR Gramene; AT3G28640.1; AT3G28640.1; AT3G28640.
DR KEGG; ath:AT3G28640; -.
DR Araport; AT3G28640; -.
DR TAIR; AT3G28640; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_6_1; -.
DR InParanoid; Q9LJJ1; -.
DR OMA; HAMEAIH; -.
DR OrthoDB; 390231at2759; -.
DR PhylomeDB; Q9LJJ1; -.
DR PRO; PR:Q9LJJ1; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LJJ1; baseline and differential.
DR Genevisible; Q9LJJ1; AT.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 3.
DR PANTHER; PTHR47928:SF190; OS04G0110500 PROTEIN; 1.
DR PANTHER; PTHR47928; REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Reference proteome; Repeat.
FT CHAIN 1..504
FT /note="Putative pentatricopeptide repeat-containing protein
FT At3g28640"
FT /id="PRO_0000356118"
FT REPEAT 77..107
FT /note="PPR 1"
FT REPEAT 115..149
FT /note="PPR 2"
FT REPEAT 151..181
FT /note="PPR 3"
FT REPEAT 182..216
FT /note="PPR 4"
FT REPEAT 217..251
FT /note="PPR 5"
FT REPEAT 253..287
FT /note="PPR 6"
FT REPEAT 288..319
FT /note="PPR 7"
FT REPEAT 320..350
FT /note="PPR 8"
FT REPEAT 356..390
FT /note="PPR 9"
FT REGION 391..470
FT /note="Type E motif"
FT REGION 471..501
FT /note="Type E(+) motif"
SQ SEQUENCE 504 AA; 56568 MW; 0A8CF5C32134C5E2 CRC64;
MSVVSSFHQS WKSLILASQR CNTVKQIKST HSLFIIHGLH RNTYAISKLL TAFLHLPNLN
KHFHYASSIF DSIEIPNSFV YDTMIRICSR SSQPHLGLRY FLLMVKEEEE DIAPSYLTFH
FLIVACLKAC FFSVGKQIHC WVVKNGVFLS DSHVQTGVLR IYVEDKLLLD ARKVFDEIPQ
PDVVKWDVLM NGYVRCGLGS EGLEVFREML VKGLEPDEFS VTTALTACAQ VGALAQGKWI
HEFVKKKSWI ESDVFVGTAL VDMYAKCGCI ETAVEVFKKL TRRNVFSWAA LIGGYAAYGY
AKKAMTCLER LEREDGIKPD SVVLLGVLAA CAHGGFLEEG RSMLENMEAR YEITPKHEHY
SCIVDLMCRA GRLDDALNLI EKMPMKPLAS VWGALLNGCR THKNVELGEL AVKNLLDLEK
GNVEEEEAAL VQLSNIYFSV QRNPEASKVR GMIEQRGVRK TPGWSVLEVD GNVTKFVSGD
VSHPNLLQIH TVIHLLSVDA LQIL
//
