ID PPR80_ARATH Reviewed; 717 AA.
AC Q9C8L6; Q9LPH5;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-2008, sequence version 2.
DT 27-MAR-2024, entry version 126.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g53600, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-E63; OrderedLocusNames=At1g53600; ORFNames=F22G10.27, T3F20.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-E subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF78430.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAG51982.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC018748; AAF78430.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC024260; AAG51982.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE32968.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM58842.1; -; Genomic_DNA.
DR PIR; B96576; B96576.
DR RefSeq; NP_001321251.1; NM_001333599.1.
DR RefSeq; NP_175765.2; NM_104238.3.
DR AlphaFoldDB; Q9C8L6; -.
DR SMR; Q9C8L6; -.
DR PaxDb; 3702-AT1G53600-1; -.
DR ProteomicsDB; 226467; -.
DR EnsemblPlants; AT1G53600.1; AT1G53600.1; AT1G53600.
DR EnsemblPlants; AT1G53600.2; AT1G53600.2; AT1G53600.
DR GeneID; 841795; -.
DR Gramene; AT1G53600.1; AT1G53600.1; AT1G53600.
DR Gramene; AT1G53600.2; AT1G53600.2; AT1G53600.
DR KEGG; ath:AT1G53600; -.
DR Araport; AT1G53600; -.
DR TAIR; AT1G53600; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_30_4_1; -.
DR InParanoid; Q9C8L6; -.
DR OMA; SVITMYC; -.
DR OrthoDB; 891804at2759; -.
DR PhylomeDB; Q9C8L6; -.
DR PRO; PR:Q9C8L6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C8L6; baseline and differential.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 9.
DR PANTHER; PTHR24015:SF1672; OS06G0506100 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 16.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..47
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 48..717
FT /note="Pentatricopeptide repeat-containing protein
FT At1g53600, mitochondrial"
FT /id="PRO_0000342821"
FT REPEAT 49..79
FT /note="PPR 1"
FT REPEAT 80..110
FT /note="PPR 2"
FT REPEAT 111..142
FT /note="PPR 3"
FT REPEAT 143..173
FT /note="PPR 4"
FT REPEAT 176..206
FT /note="PPR 5"
FT REPEAT 207..241
FT /note="PPR 6"
FT REPEAT 242..272
FT /note="PPR 7"
FT REPEAT 274..308
FT /note="PPR 8"
FT REPEAT 309..339
FT /note="PPR 9"
FT REPEAT 340..374
FT /note="PPR 10"
FT REPEAT 375..401
FT /note="PPR 11"
FT REPEAT 402..436
FT /note="PPR 12"
FT REPEAT 437..471
FT /note="PPR 13"
FT REPEAT 472..502
FT /note="PPR 14"
FT REPEAT 503..537
FT /note="PPR 15"
FT REPEAT 538..568
FT /note="PPR 16"
FT REPEAT 574..604
FT /note="PPR 17"
FT REGION 609..684
FT /note="Type E motif"
FT REGION 685..715
FT /note="Type E(+) motif"
SQ SEQUENCE 717 AA; 80499 MW; 3B1F105DF62129FE CRC64;
MVMRPISNKG LIYRHNICLR CNSTLAVSNH EPITQKTRNF LETTTTSTAI FQCNSQISKH
ARNGNLQEAE AIFRQMSNRS IVSWIAMISA YAENGKMSKA WQVFDEMPVR VTTSYNAMIT
AMIKNKCDLG KAYELFCDIP EKNAVSYATM ITGFVRAGRF DEAEFLYAET PVKFRDSVAS
NVLLSGYLRA GKWNEAVRVF QGMAVKEVVS CSSMVHGYCK MGRIVDARSL FDRMTERNVI
TWTAMIDGYF KAGFFEDGFG LFLRMRQEGD VKVNSNTLAV MFKACRDFVR YREGSQIHGL
VSRMPLEFDL FLGNSLMSMY SKLGYMGEAK AVFGVMKNKD SVSWNSLITG LVQRKQISEA
YELFEKMPGK DMVSWTDMIK GFSGKGEISK CVELFGMMPE KDNITWTAMI SAFVSNGYYE
EALCWFHKML QKEVCPNSYT FSSVLSATAS LADLIEGLQI HGRVVKMNIV NDLSVQNSLV
SMYCKCGNTN DAYKIFSCIS EPNIVSYNTM ISGYSYNGFG KKALKLFSML ESSGKEPNGV
TFLALLSACV HVGYVDLGWK YFKSMKSSYN IEPGPDHYAC MVDLLGRSGL LDDASNLIST
MPCKPHSGVW GSLLSASKTH LRVDLAELAA KKLIELEPDS ATPYVVLSQL YSIIGKNRDC
DRIMNIKKSK RIKKDPGSSW IILKGEVHNF LAGDESQLNL EEIGFTLKMI RKEMELI
//
