ID PPR99_ARATH Reviewed; 630 AA.
AC Q9CAN0;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 27-MAR-2024, entry version 127.
DE RecName: Full=Pentatricopeptide repeat-containing protein At1g63130, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At1g63130; ORFNames=F16M19.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AC010795; AAG51613.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34059.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM61079.1; -; Genomic_DNA.
DR EMBL; AY128387; AAM91590.1; -; mRNA.
DR EMBL; BT000125; AAN15444.1; -; mRNA.
DR PIR; G96656; G96656.
DR RefSeq; NP_001323319.1; NM_001334067.1.
DR RefSeq; NP_176501.1; NM_104991.3.
DR AlphaFoldDB; Q9CAN0; -.
DR SMR; Q9CAN0; -.
DR BioGRID; 27838; 1.
DR IntAct; Q9CAN0; 1.
DR STRING; 3702.Q9CAN0; -.
DR iPTMnet; Q9CAN0; -.
DR PaxDb; 3702-AT1G63130-1; -.
DR ProteomicsDB; 225987; -.
DR EnsemblPlants; AT1G63130.1; AT1G63130.1; AT1G63130.
DR EnsemblPlants; AT1G63130.2; AT1G63130.2; AT1G63130.
DR GeneID; 842617; -.
DR Gramene; AT1G63130.1; AT1G63130.1; AT1G63130.
DR Gramene; AT1G63130.2; AT1G63130.2; AT1G63130.
DR KEGG; ath:AT1G63130; -.
DR Araport; AT1G63130; -.
DR TAIR; AT1G63130; RPF6.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_12_1; -.
DR InParanoid; Q9CAN0; -.
DR OMA; CQRNRVF; -.
DR OrthoDB; 675866at2759; -.
DR PhylomeDB; Q9CAN0; -.
DR PRO; PR:Q9CAN0; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9CAN0; baseline and differential.
DR Genevisible; Q9CAN0; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 7.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 14.
DR PANTHER; PTHR47941; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR PANTHER; PTHR47941:SF54; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 6.
DR SUPFAM; SSF81901; HCP-like; 1.
DR PROSITE; PS51375; PPR; 15.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..22
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 23..630
FT /note="Pentatricopeptide repeat-containing protein
FT At1g63130, mitochondrial"
FT /id="PRO_0000342840"
FT REPEAT 80..114
FT /note="PPR 1"
FT REPEAT 115..149
FT /note="PPR 2"
FT REPEAT 150..184
FT /note="PPR 3"
FT REPEAT 185..219
FT /note="PPR 4"
FT REPEAT 220..254
FT /note="PPR 5"
FT REPEAT 255..289
FT /note="PPR 6"
FT REPEAT 290..324
FT /note="PPR 7"
FT REPEAT 325..359
FT /note="PPR 8"
FT REPEAT 360..394
FT /note="PPR 9"
FT REPEAT 395..429
FT /note="PPR 10"
FT REPEAT 430..464
FT /note="PPR 11"
FT REPEAT 465..499
FT /note="PPR 12"
FT REPEAT 500..534
FT /note="PPR 13"
FT REPEAT 535..569
FT /note="PPR 14"
FT REPEAT 570..604
FT /note="PPR 15"
SQ SEQUENCE 630 AA; 70969 MW; EE5A16DE980CCDC9 CRC64;
MRRLFAISST GNRFVHRSLL GKGKCGTAPP SFSHCSFWVR DFSGVRYDYR KISINRLNDL
KLDDAVNLFG DMVKSRPFPS IVEFSKLLSA IAKMNKFDLV ISLGEQMQNL GISHNLYTYS
ILINCFCRRS QLSLALAVLA KMMKLGYEPD IVTLNSLLNG FCHGNRISDA VSLVGQMVEM
GYQPDSFTFN TLIHGLFRHN RASEAVALVD RMVVKGCQPD LVTYGIVVNG LCKRGDIDLA
LSLLKKMEQG KIEPGVVIYN TIIDALCNYK NVNDALNLFT EMDNKGIRPN VVTYNSLIRC
LCNYGRWSDA SRLLSDMIER KINPNVVTFS ALIDAFVKEG KLVEAEKLYD EMIKRSIDPD
IFTYSSLING FCMHDRLDEA KHMFELMISK DCFPNVVTYN TLIKGFCKAK RVDEGMELFR
EMSQRGLVGN TVTYTTLIHG FFQARECDNA QIVFKQMVSD GVLPDIMTYS ILLDGLCNNG
KVETALVVFE YLQRSKMEPD IYTYNIMIEG MCKAGKVEDG WDLFCSLSLK GVKPNVVTYT
TMMSGFCRKG LKEEADALFR EMKEEGPLPD SGTYNTLIRA HLRDGDKAAS AELIREMRSC
RFVGDASTIG LVTNMLHDGR LDKSFLKMLS
//
