ID Q03F38_PEDPA Unreviewed; 773 AA.
AC Q03F38;
DT 14-NOV-2006, integrated into UniProtKB/TrEMBL.
DT 14-NOV-2006, sequence version 1.
DT 27-MAR-2024, entry version 86.
DE RecName: Full=Single-stranded-DNA-specific exonuclease RecJ {ECO:0000256|ARBA:ARBA00019841};
GN OrderedLocusNames=PEPE_1130 {ECO:0000313|EMBL:ABJ68184.1};
OS Pediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 /
OS 183-1w).
OC Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae;
OC Pediococcus.
OX NCBI_TaxID=278197 {ECO:0000313|EMBL:ABJ68184.1, ECO:0000313|Proteomes:UP000000773};
RN [1] {ECO:0000313|EMBL:ABJ68184.1, ECO:0000313|Proteomes:UP000000773}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w
RC {ECO:0000313|Proteomes:UP000000773};
RX PubMed=17030793; DOI=10.1073/pnas.0607117103;
RA Makarova K., Slesarev A., Wolf Y., Sorokin A., Mirkin B., Koonin E.,
RA Pavlov A., Pavlova N., Karamychev V., Polouchine N., Shakhova V.,
RA Grigoriev I., Lou Y., Rohksar D., Lucas S., Huang K., Goodstein D.M.,
RA Hawkins T., Plengvidhya V., Welker D., Hughes J., Goh Y., Benson A.,
RA Baldwin K., Lee J.H., Diaz-Muniz I., Dosti B., Smeianov V., Wechter W.,
RA Barabote R., Lorca G., Altermann E., Barrangou R., Ganesan B., Xie Y.,
RA Rawsthorne H., Tamir D., Parker C., Breidt F., Broadbent J., Hutkins R.,
RA O'Sullivan D., Steele J., Unlu G., Saier M., Klaenhammer T., Richardson P.,
RA Kozyavkin S., Weimer B., Mills D.;
RT "Comparative genomics of the lactic acid bacteria.";
RL Proc. Natl. Acad. Sci. U.S.A. 103:15611-15616(2006).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC -!- SIMILARITY: Belongs to the RecJ family.
CC {ECO:0000256|ARBA:ARBA00005915}.
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DR EMBL; CP000422; ABJ68184.1; -; Genomic_DNA.
DR RefSeq; WP_011673510.1; NC_008525.1.
DR AlphaFoldDB; Q03F38; -.
DR STRING; 278197.PEPE_1130; -.
DR GeneID; 33062517; -.
DR KEGG; ppe:PEPE_1130; -.
DR eggNOG; COG0608; Bacteria.
DR HOGENOM; CLU_009736_4_1_9; -.
DR OrthoDB; 9809852at2; -.
DR Proteomes; UP000000773; Chromosome.
DR GO; GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR Gene3D; 2.40.50.460; -; 1.
DR Gene3D; 3.90.1640.30; -; 1.
DR InterPro; IPR001667; DDH_dom.
DR InterPro; IPR038763; DHH_sf.
DR InterPro; IPR003156; DHHA1_dom.
DR InterPro; IPR004610; RecJ.
DR InterPro; IPR018779; RecJ_C.
DR InterPro; IPR041122; RecJ_OB.
DR NCBIfam; TIGR00644; recJ; 1.
DR PANTHER; PTHR30255; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ; 1.
DR PANTHER; PTHR30255:SF2; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ; 1.
DR Pfam; PF01368; DHH; 1.
DR Pfam; PF02272; DHHA1; 1.
DR Pfam; PF17768; RecJ_OB; 1.
DR Pfam; PF10141; ssDNA-exonuc_C; 1.
DR SUPFAM; SSF64182; DHH phosphoesterases; 1.
PE 3: Inferred from homology;
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839, ECO:0000313|EMBL:ABJ68184.1};
KW Hydrolase {ECO:0000313|EMBL:ABJ68184.1};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722}.
FT DOMAIN 82..227
FT /note="DDH"
FT /evidence="ECO:0000259|Pfam:PF01368"
FT DOMAIN 317..439
FT /note="DHHA1"
FT /evidence="ECO:0000259|Pfam:PF02272"
FT DOMAIN 455..562
FT /note="RecJ OB"
FT /evidence="ECO:0000259|Pfam:PF17768"
FT DOMAIN 569..758
FT /note="Single-stranded-DNA-specific exonuclease RecJ C-
FT terminal"
FT /evidence="ECO:0000259|Pfam:PF10141"
SQ SEQUENCE 773 AA; 86702 MW; 136463EA028CECE0 CRC64;
MKDNRFNWQV SKLDDVDIDQ LASETKLSQT MVKIMVARGF KTGEDILSFI DEDMSIVHDP
MLLHDMQKAL DRIFVAIESN EKILVYGDYD ADGVTSTTIM YETLDQLGAN VQYFVPDRFK
DGYGPNLKKY QHFINDEGVQ LIITVDNGVA GNEAIKFAED QGTNVIVTDH HEIPEVLPEA
YAIIHPRHPE GAYPFGDLSG VGVAFKVATA LLEEIPEEFL DLYAIGTTAD LVSMTDENRF
LVKMGLEMIP NTQRIGLQKL IEISGVDVSH FDEQDIGFTV APRINAVGRL ENASRAVELL
TTFDEEEATT IAQEINKINS KRQGLVSDIY TEAEEIALDD EHASRQTLVI AGHDWHQGVL
GIVASRIVER TNKPTIVLSD QGGNGIYKGS GRSVAALNLF EAINPIREKC VGFGGHHMAI
GVTVEADQLA TLTDQLEKAA QLVNLDFKQQ PQLQIDLKVN IEELTEKLVS EMKILGPFGM
NNPVPKFELE DVRVKEAKAI GKDGAHLKFT LDDGNQNINA IAFKRGELAD VLNNVANPIS
LVGTINTNEW RGNVSVQFMT DDIKIDGLQV IDQRTSNLNK NLFKSDMQYV FFNQKLMDLI
QSQNLNRKFY YYSSSAIEKN DTIVLVDCPD NLAKMAELIK ATQPQRIITY FFHNVDFYAS
GMPSRIEFKQ MFGIVKTQKL TKTDIMQLGP KLKIDQEKIN FMIKVFFELN FVKIENGLLF
INAEAEQHQL TEAPAYKKRE ELIQTQEKLL YSSGDELSAI VERLMNVDNK GVS
//
