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Database: UniProt
Entry: Q09908
LinkDB: Q09908
Original site: Q09908 
ID   PHF2_SCHPO              Reviewed;         538 AA.
AC   Q09908;
DT   01-FEB-1996, integrated into UniProtKB/Swiss-Prot.
DT   01-FEB-1996, sequence version 1.
DT   24-JAN-2024, entry version 130.
DE   RecName: Full=SWM histone demethylase complex subunit phf2;
DE   AltName: Full=PHD finger domain-containing protein phf2;
GN   Name=phf2; Synonyms=saf60, swp2; ORFNames=SPAC30D11.08c;
OS   Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast).
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
OC   Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae;
OC   Schizosaccharomyces.
OX   NCBI_TaxID=284812;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=972 / ATCC 24843;
RX   PubMed=11859360; DOI=10.1038/nature724;
RA   Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A.,
RA   Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S.,
RA   Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.,
RA   Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S.,
RA   Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S.,
RA   Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D.,
RA   Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P.,
RA   Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K.,
RA   O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M.,
RA   Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N.,
RA   Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A.,
RA   Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R.,
RA   Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M.,
RA   Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A.,
RA   Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A.,
RA   Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H.,
RA   Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S.,
RA   Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C.,
RA   Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A.,
RA   Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M.,
RA   del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S.,
RA   Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R.,
RA   Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G.,
RA   Nurse P.;
RT   "The genome sequence of Schizosaccharomyces pombe.";
RL   Nature 415:871-880(2002).
RN   [2]
RP   IDENTIFICATION IN THE SWM HISTONE DEMETHYLASE COMPLEX.
RX   PubMed=16990277; DOI=10.1074/jbc.m606349200;
RA   Nicolas E., Lee M.G., Hakimi M.-A., Cam H.P., Grewal S.I.S.,
RA   Shiekhattar R.;
RT   "Fission yeast homologs of human histone H3 lysine 4 demethylase regulate a
RT   common set of genes with diverse functions.";
RL   J. Biol. Chem. 281:35983-35988(2006).
RN   [3]
RP   IDENTIFICATION IN THE SWM HISTONE DEMETHYLASE COMPLEX, AND FUNCTION OF THE
RP   SWM COMPLEX.
RX   PubMed=17434129; DOI=10.1016/j.molcel.2007.02.023;
RA   Lan F., Zaratiegui M., Villen J., Vaughn M.W., Verdel A., Huarte M.,
RA   Shi Y., Gygi S.P., Moazed D., Martienssen R.A., Shi Y.;
RT   "S. pombe LSD1 homologs regulate heterochromatin propagation and
RT   euchromatic gene transcription.";
RL   Mol. Cell 26:89-101(2007).
RN   [4]
RP   IDENTIFICATION IN THE SWM HISTONE DEMETHYLASE COMPLEX, AND FUNCTION OF THE
RP   SWM COMPLEX.
RX   PubMed=17440621; DOI=10.1371/journal.pone.0000386;
RA   Opel M., Lando D., Bonilla C., Trewick S.C., Boukaba A., Walfridsson J.,
RA   Cauwood J., Werler P.J., Carr A.M., Kouzarides T., Murzina N.V.,
RA   Allshire R.C., Ekwall K., Laue E.D.;
RT   "Genome-wide studies of histone demethylation catalysed by the fission
RT   yeast homologues of mammalian LSD1.";
RL   PLoS ONE 2:E386-E386(2007).
CC   -!- FUNCTION: Component of the SWM histone demethylase complex that
CC       specifically demethylates H3K9me2, a specific tag for epigenetic
CC       transcriptional activation, thereby acting as a corepressor. Has a role
CC       in regulating heterochromatin propagation and euchromatic
CC       transcription. {ECO:0000269|PubMed:17434129,
CC       ECO:0000269|PubMed:17440621}.
CC   -!- SUBUNIT: Component of the SWM histone demethylase complex composed of
CC       at least lsd1, lsd2, phf1 and phf2. {ECO:0000269|PubMed:16990277,
CC       ECO:0000269|PubMed:17434129, ECO:0000269|PubMed:17440621}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
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DR   EMBL; CU329670; CAA91894.1; -; Genomic_DNA.
DR   PIR; T38591; S62566.
DR   RefSeq; NP_593209.1; NM_001018605.2.
DR   AlphaFoldDB; Q09908; -.
DR   SMR; Q09908; -.
DR   BioGRID; 278708; 14.
DR   STRING; 284812.Q09908; -.
DR   iPTMnet; Q09908; -.
DR   MaxQB; Q09908; -.
DR   PaxDb; 4896-SPAC30D11-08c-1; -.
DR   EnsemblFungi; SPAC30D11.08c.1; SPAC30D11.08c.1:pep; SPAC30D11.08c.
DR   GeneID; 2542236; -.
DR   KEGG; spo:SPAC30D11.08c; -.
DR   PomBase; SPAC30D11.08c; phf2.
DR   VEuPathDB; FungiDB:SPAC30D11.08c; -.
DR   eggNOG; KOG4323; Eukaryota.
DR   HOGENOM; CLU_506376_0_0_1; -.
DR   InParanoid; Q09908; -.
DR   OMA; FHQLCHE; -.
DR   PRO; PR:Q09908; -.
DR   Proteomes; UP000002485; Chromosome I.
DR   GO; GO:0033193; C:Lsd1/2 complex; IDA:PomBase.
DR   GO; GO:0005634; C:nucleus; HDA:PomBase.
DR   GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR   GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006325; P:chromatin organization; IBA:GO_Central.
DR   GO; GO:0006338; P:chromatin remodeling; IPI:PomBase.
DR   GO; GO:0033696; P:heterochromatin boundary formation; IPI:PomBase.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IBA:GO_Central.
DR   CDD; cd15502; PHD_Phf1p_Phf2p_like; 1.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR   InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR019787; Znf_PHD-finger.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR12628:SF10; C. ELEGANS HOMEOBOX; 1.
DR   PANTHER; PTHR12628; POLYCOMB-LIKE TRANSCRIPTION FACTOR; 1.
DR   Pfam; PF00628; PHD; 1.
DR   SMART; SM00249; PHD; 1.
DR   SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR   PROSITE; PS01359; ZF_PHD_1; 1.
DR   PROSITE; PS50016; ZF_PHD_2; 1.
PE   1: Evidence at protein level;
KW   Chromatin regulator; Metal-binding; Nucleus; Reference proteome;
KW   Transcription; Transcription regulation; Zinc; Zinc-finger.
FT   CHAIN           1..538
FT                   /note="SWM histone demethylase complex subunit phf2"
FT                   /id="PRO_0000116437"
FT   ZN_FING         232..288
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00146"
FT   REGION          28..47
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          98..150
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          198..222
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          367..396
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        108..150
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        198..218
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        367..395
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   538 AA;  60696 MW;  2FD754D50145982C CRC64;
     MPNSSYYDDD GGSFEAASYP FQFDGSRRFP NDLHPTMFEG EESNQNGGSV LIDQAFQDIQ
     NPNVNSNMHL ENQFQHFHEP NKESGAFGSY KNDDVAKEIE SSKNQETDAK SEQAPFTEDA
     SSSNYAHHRS ADSQTKSALP PNVPASSSPL PPMSIAMNIA RKRSWPASLA IERDNTADAL
     FSTEDGREEQ FNLEGVKTKS GRKVHRPNHF DPLVKLPTRR RGPGRRPVVA LAMKCSVCQR
     LQSPPKNRIV FCDGCNTPFH QLCHEPYISD ELLDSPNGEW FCDDCIRRKK QAPLVTGTTA
     RELNLSSEEK KSYLLSLPIS QLVDILLFCE QLHPDIPFYS PKTSTIVQEL QSKRSAFTAT
     MNEPVTGDQY LSLNNGTESQ SKTTKHSTSL PSTEPVEVDK QYMESEKIPT IDEYLQEYSN
     EDEIVLQVLE SFPAAVSFST ITNTIQAKYS NRKIKNSNIT RSLNRLVRKN RVLRDARGSS
     YELNRTFDAD RPSVRPDISI TGPIPIDWML YTPHTEDLTE NFCTYYMFDE TPIVLSSI
//
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