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Database: UniProt
Entry: Q0DLB9
LinkDB: Q0DLB9
Original site: Q0DLB9 
ID   RH17_ORYSJ              Reviewed;         591 AA.
AC   Q0DLB9; B9FM36; Q65XW2; Q94HJ1;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   03-APR-2007, sequence version 2.
DT   16-OCT-2019, entry version 82.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 17 {ECO:0000305};
DE            Short=OsRH17 {ECO:0000303|PubMed:25447922};
DE            EC=3.6.4.13 {ECO:0000305};
GN   Name=RH17 {ECO:0000303|PubMed:25447922};
GN   OrderedLocusNames=Os05g0110500 {ECO:0000312|EMBL:BAS91915.1},
GN   LOC_Os05g01990 {ECO:0000305};
GN   ORFNames=OsJ_16855 {ECO:0000312|EMBL:EEE62071.1},
GN   P0016H04.6 {ECO:0000312|EMBL:AAU44200.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA   Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA   Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S.,
RA   Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT   "A fine physical map of the rice chromosome 5.";
RL   Mol. Genet. Genomics 274:337-345(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
RA   McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
RA   Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
RA   Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
RA   Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using
RT   next generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
RA   Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
RA   Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
RA   Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
RA   Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
RA   Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
RA   Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
RA   Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
RA   Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
RA   Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA   Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [7]
RP   FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION.
RX   PubMed=25447922; DOI=10.1016/j.gene.2014.11.025;
RA   Xu J., Liu C., Li M., Hu J., Zhu L., Zeng D., Yang Y., Peng Y.,
RA   Ruan B., Guo L., Li H.;
RT   "A rice DEAD-box RNA helicase protein, OsRH17, suppresses 16S
RT   ribosomal RNA maturation in Escherichia coli.";
RL   Gene 555:318-328(2015).
CC   -!- FUNCTION: May play a role in organellar ribosome biogenesis and
CC       suppress 16S rRNA maturation. {ECO:0000305|PubMed:25447922}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC         Evidence={ECO:0000305};
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:25447922}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q0DLB9-1; Sequence=Displayed;
CC         Note=No experimental confirmation available. {ECO:0000305};
CC       Name=2;
CC         IsoId=Q0DLB9-2; Sequence=VSP_024167, VSP_024168;
CC         Note=No experimental confirmation available. {ECO:0000305};
CC   -!- TISSUE SPECIFICITY: Expressed in flowers and pollen grains.
CC       {ECO:0000269|PubMed:25447922}.
CC   -!- INDUCTION: Induced by auxin (NAA), abscisic acid (ABA) and
CC       jasmonate (JA). {ECO:0000269|PubMed:25447922}.
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD
CC       box family of RNA helicases and controls ATP binding and
CC       hydrolysis. {ECO:0000305}.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX31/DBP7
CC       subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAK73153.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=AK066175; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
DR   EMBL; AC079022; AAK73153.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AC079356; AAU44200.1; -; Genomic_DNA.
DR   EMBL; AP008211; BAF16354.2; -; Genomic_DNA.
DR   EMBL; AP014961; BAS91914.1; -; Genomic_DNA.
DR   EMBL; AP014961; BAS91915.1; -; Genomic_DNA.
DR   EMBL; CM000142; EEE62071.1; -; Genomic_DNA.
DR   EMBL; AK060179; -; NOT_ANNOTATED_CDS; mRNA.
DR   EMBL; AK066175; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015640476.1; XM_015784990.1. [Q0DLB9-1]
DR   SMR; Q0DLB9; -.
DR   STRING; 4530.OS05T0110500-02; -.
DR   PaxDb; Q0DLB9; -.
DR   PRIDE; Q0DLB9; -.
DR   EnsemblPlants; Os05t0110500-01; Os05t0110500-01; Os05g0110500. [Q0DLB9-2]
DR   EnsemblPlants; Os05t0110500-02; Os05t0110500-02; Os05g0110500. [Q0DLB9-1]
DR   GeneID; 4337589; -.
DR   Gramene; Os05t0110500-01; Os05t0110500-01; Os05g0110500. [Q0DLB9-2]
DR   Gramene; Os05t0110500-02; Os05t0110500-02; Os05g0110500. [Q0DLB9-1]
DR   KEGG; osa:4337589; -.
DR   eggNOG; KOG0348; Eukaryota.
DR   eggNOG; ENOG410XNT7; LUCA.
DR   HOGENOM; HOG000268799; -.
DR   InParanoid; Q0DLB9; -.
DR   KO; K14806; -.
DR   OMA; FSRIQWL; -.
DR   OrthoDB; 973872at2759; -.
DR   Proteomes; UP000059680; Chromosome 5.
DR   ExpressionAtlas; Q0DLB9; baseline and differential.
DR   Genevisible; Q0DLB9; OS.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   GO; GO:0009651; P:response to salt stress; IEA:EnsemblPlants.
DR   GO; GO:0042254; P:ribosome biogenesis; IBA:GO_Central.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR025313; DUF4217.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF13959; DUF4217; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM01178; DUF4217; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 2.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   2: Evidence at transcript level;
KW   Alternative splicing; ATP-binding; Complete proteome; Helicase;
KW   Hydrolase; Nucleotide-binding; Nucleus; Reference proteome;
KW   Ribosome biogenesis; RNA-binding.
FT   CHAIN         1    591       DEAD-box ATP-dependent RNA helicase 17.
FT                                /FTId=PRO_0000282495.
FT   DOMAIN       55    248       Helicase ATP-binding.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00541}.
FT   DOMAIN      293    482       Helicase C-terminal.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00542}.
FT   NP_BIND      68     75       ATP. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00541}.
FT   MOTIF        23     52       Q motif.
FT   MOTIF       181    184       DEAD box.
FT   VAR_SEQ     428    434       VGRTARI -> YLKHLPV (in isoform 2).
FT                                {ECO:0000303|PubMed:12869764}.
FT                                /FTId=VSP_024167.
FT   VAR_SEQ     435    591       Missing (in isoform 2).
FT                                {ECO:0000303|PubMed:12869764}.
FT                                /FTId=VSP_024168.
FT   CONFLICT    360    360       Q -> R (in Ref. 6; AK066175).
FT                                {ECO:0000305}.
SQ   SEQUENCE   591 AA;  66904 MW;  D0ACEFE4AD816DF1 CRC64;
     MAKKLGKSPV AKEEDKEGLF ASCSFTDLGL HPTLCAHLQD KMGFQAPTRI QAQAIPVAMS
     GQHMLVKAAT GTGKTLAYLA PIVHLLQMRE PRVERTDGTF ALVLVPTREL CLQVYGIAQQ
     LVHRFHWLVP GYIMGGENRA KEKARLRKGI SILIATPGRL LDHLQHTSSF VYPNMRWIVF
     DEADSILELG FGKALEDILE HLGSRNDTSN QNKNKMEPMK RQNLLLSATL NEKVNRLAKI
     SLKNPVMIGL DEQNSSAHGK NHTSLLSDDE EEILEKHNVT VEQAVDDFKL PAQLVQRYVK
     VSCGSRLAIL LTILKSLFER QLSHKVVVFL STCDSVDFHH TVLSQLEWSP GLQLDTDKKQ
     KFISCKVFRL HGNMDQDDRK KSFLGFSSEK SAILVSTDVA ARGLDFPKVK CIIQYDSPGE
     ASEYVHRVGR TARIGEKGEA LLFLQPIETD YLRDLELHGA SLTEYPLQKV LDSFPVNGQR
     LHKRKQISLD MHPWIMSLQR ALESFVTSED TTKKLARDAF CSWVRAYTAH RGELKKIFMV
     KKLHLGHVAR SFGLKEQPSL LGRSHQVQLK KRKKEQKRER PAKRRKIPAK R
//
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