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Database: UniProt
Entry: Q0ILZ4
LinkDB: Q0ILZ4
Original site: Q0ILZ4 
ID   RH9_ORYSJ               Reviewed;         628 AA.
AC   Q0ILZ4; A0A0P0YBZ7;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   03-OCT-2006, sequence version 1.
DT   16-OCT-2019, entry version 84.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 9;
DE            EC=3.6.4.13;
GN   OrderedLocusNames=Os12g0611200, LOC_Os12g41715;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
RA   McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
RA   Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
RA   Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
RA   Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using
RT   next generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RG   The rice full-length cDNA consortium;
RT   "Oryza sativa full length cDNA.";
RL   Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD
CC       box family of RNA helicases and controls ATP binding and
CC       hydrolysis.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX21/DDX50
CC       subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAF30271.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
DR   EMBL; AP008218; BAF30271.2; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP014968; BAT18038.1; -; Genomic_DNA.
DR   EMBL; AK287833; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015620393.1; XM_015764907.1.
DR   SMR; Q0ILZ4; -.
DR   STRING; 4530.OS12T0611200-01; -.
DR   PaxDb; Q0ILZ4; -.
DR   PRIDE; Q0ILZ4; -.
DR   EnsemblPlants; Os12t0611200-01; Os12t0611200-01; Os12g0611200.
DR   GeneID; 4352769; -.
DR   Gramene; Os12t0611200-01; Os12t0611200-01; Os12g0611200.
DR   KEGG; osa:4352769; -.
DR   eggNOG; KOG0331; Eukaryota.
DR   eggNOG; COG0513; LUCA.
DR   InParanoid; Q0ILZ4; -.
DR   OMA; SGEMSRY; -.
DR   OrthoDB; 1139373at2759; -.
DR   Proteomes; UP000059680; Chromosome 12.
DR   Genevisible; Q0ILZ4; OS.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   GO; GO:0000373; P:Group II intron splicing; IBA:GO_Central.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Complete proteome; Helicase; Hydrolase;
KW   Nucleotide-binding; Reference proteome; RNA-binding.
FT   CHAIN         1    628       DEAD-box ATP-dependent RNA helicase 9.
FT                                /FTId=PRO_0000282475.
FT   DOMAIN      129    302       Helicase ATP-binding.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00541}.
FT   DOMAIN      331    478       Helicase C-terminal.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00542}.
FT   NP_BIND     142    149       ATP. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00541}.
FT   MOTIF        98    126       Q motif.
FT   MOTIF       250    253       DEAD box.
FT   COMPBIAS    480    626       Gly-rich.
SQ   SEQUENCE   628 AA;  65595 MW;  EFBFE0AC2784EF9A CRC64;
     MYSILRRAAP LRRRAVSALA AAVLRREEAA AEVVVSRRAT IPAAWFHSSP AWLGFRETGA
     AGAAARPQYA ADEGLFYEED KRGAKAGGVA AGGAEEGLEV AKLGISPKIV SQLASRGITK
     LFPIQRAVLE PAMQGKDMVG RAKTGTGKTL AFGIPILDAI IRHNEKNSPG KFPLAIVLAP
     TRELAKQVER EFSDSSNVET ICVYGGTPIS QQIRQLNYGV DVVIGTPGRV IDLLKRGALN
     LSEVRFVVLD EADQMLSVGF DEDVETILDR VPPKRQTLMF SATMPTWIQR LTQKYLKNPV
     TIDLVGEDDQ KLAEGISLYS IASEGHAKPA VLGELIKEHA KGGKCIVFTQ TKRDADRLSY
     TMGRSFQCQA LHGDITQAQR ERTLKGFREG HFNILIATDV AARGLDIPNV DLVIHFELPN
     SSELFVHRSG RTGRAGKKGK AIVMHSYQQS RAIRMVENDV GCKFTELPKI NVEGSDLMSG
     GFDSFGGGGF GREGGGSYGR RGSFGSSSSR GGGFGDSGFG RSGGGFGRSG GGGFGRSSGG
     GFGDSGFGRS GGGGFGDSGF GRSGGGGYGD SGFGSSGGGS GRSGFGRSGG FGDSGSGRFG
     GGFGNSGSGS FGNFGGNNSG QSGGFGSS
//
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