ID Q13HW4_PARXL Unreviewed; 402 AA.
AC Q13HW4;
DT 22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT 22-AUG-2006, sequence version 1.
DT 24-JAN-2024, entry version 97.
DE SubName: Full=Orn/DAP/Arg decarboxylase {ECO:0000313|EMBL:ABE36325.1};
DE EC=4.1.1.20 {ECO:0000313|EMBL:ABE36325.1};
GN ORFNames=Bxe_C0421 {ECO:0000313|EMBL:ABE36325.1};
OS Paraburkholderia xenovorans (strain LB400).
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Burkholderiaceae; Paraburkholderia.
OX NCBI_TaxID=266265 {ECO:0000313|EMBL:ABE36325.1, ECO:0000313|Proteomes:UP000001817};
RN [1] {ECO:0000313|EMBL:ABE36325.1, ECO:0000313|Proteomes:UP000001817}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=LB400 {ECO:0000313|EMBL:ABE36325.1,
RC ECO:0000313|Proteomes:UP000001817};
RX PubMed=17030797; DOI=10.1073/pnas.0606924103;
RA Chain P.S., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L.,
RA Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M., Lao V.,
RA Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A., Marx C.J.,
RA Parnell J.J., Ramette A., Richardson P., Seeger M., Smith D., Spilker T.,
RA Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B., Tiedje J.M.;
RT "Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome
RT shaped for versatility.";
RL Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006).
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933,
CC ECO:0000256|PIRSR:PIRSR600183-50};
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II family.
CC {ECO:0000256|RuleBase:RU003737}.
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DR EMBL; CP000272; ABE36325.1; -; Genomic_DNA.
DR RefSeq; WP_011493581.1; NZ_CP008761.1.
DR AlphaFoldDB; Q13HW4; -.
DR STRING; 266265.Bxe_C0421; -.
DR KEGG; bxb:DR64_8022; -.
DR KEGG; bxe:Bxe_C0421; -.
DR PATRIC; fig|266265.5.peg.8185; -.
DR eggNOG; COG0019; Bacteria.
DR OMA; NISHHDF; -.
DR OrthoDB; 9802147at2; -.
DR Proteomes; UP000001817; Chromosome 3.
DR GO; GO:0008836; F:diaminopimelate decarboxylase activity; IEA:UniProtKB-EC.
DR GO; GO:0006596; P:polyamine biosynthetic process; IEA:InterPro.
DR CDD; cd06839; PLPDE_III_Btrk_like; 1.
DR Gene3D; 3.20.20.10; Alanine racemase; 1.
DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C.
DR InterPro; IPR017530; DCO2ase_PEP1.
DR InterPro; IPR022643; De-COase2_C.
DR InterPro; IPR022644; De-COase2_N.
DR InterPro; IPR000183; Orn/DAP/Arg_de-COase.
DR InterPro; IPR002433; Orn_de-COase.
DR InterPro; IPR029066; PLP-binding_barrel.
DR NCBIfam; TIGR03099; dCO2ase_PEP1; 1.
DR PANTHER; PTHR43727; DIAMINOPIMELATE DECARBOXYLASE; 1.
DR PANTHER; PTHR43727:SF2; DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF02784; Orn_Arg_deC_N; 1.
DR Pfam; PF00278; Orn_DAP_Arg_deC; 1.
DR PRINTS; PR01179; ODADCRBXLASE.
DR PRINTS; PR01182; ORNDCRBXLASE.
DR SUPFAM; SSF50621; Alanine racemase C-terminal domain-like; 1.
DR SUPFAM; SSF51419; PLP-binding barrel; 1.
PE 3: Inferred from homology;
KW Lyase {ECO:0000313|EMBL:ABE36325.1};
KW Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR600183-50}.
FT DOMAIN 39..284
FT /note="Orn/DAP/Arg decarboxylase 2 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF02784"
FT DOMAIN 285..380
FT /note="Orn/DAP/Arg decarboxylase 2 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF00278"
FT ACT_SITE 353
FT /note="Proton donor"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
FT MOD_RES 61
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
SQ SEQUENCE 402 AA; 43555 MW; E24280FB50498A7A CRC64;
MTLTFVRRPP GLQFGGLDVR QLADRAGRTP FFAYDRSAID IRVRELRNLL PAGMHLHYSI
KANPMPAVIH HLAQRVDGFD VASAQEMALA LDAGTAPDAI GFAGPGKSHD DLRRAVASGI
NVHVESETQL RLVTALGWEL GVQPSVAIRV NPDFQVGHSG MRMGGGAAPF GVDVDQVPAL
LRELEAREVA LAGFHVFWGS QCLHAATIIK AQRQSADLIL RLASGVPRPL RFVNLGGGFG
IPYFPGETPL DVKAVCEAMQ DWLPPLCERL PGTTPILELG RYLVGEAGIY VCRVIDRKVS
RGRTFVVTDG GLHHHLAASG NFGQVLRRNF PVVIGNRPDG VPRERCHVVG CLCTPLDRLA
DEVELPEAHI GDFVVIMQSG AYGRSASPVR FLSHPEPVEM LV
//