ID Q1GHN3_RUEST Unreviewed; 254 AA.
AC Q1GHN3;
DT 27-JUN-2006, integrated into UniProtKB/TrEMBL.
DT 27-JUN-2006, sequence version 1.
DT 27-MAR-2024, entry version 89.
DE SubName: Full=Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABF63833.1};
GN OrderedLocusNames=TM1040_1100 {ECO:0000313|EMBL:ABF63833.1};
OS Ruegeria sp. (strain TM1040) (Silicibacter sp.).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Ruegeria.
OX NCBI_TaxID=292414 {ECO:0000313|EMBL:ABF63833.1, ECO:0000313|Proteomes:UP000000636};
RN [1] {ECO:0000313|Proteomes:UP000000636}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TM1040 {ECO:0000313|Proteomes:UP000000636};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Brettin T., Bruce D., Han C., Tapia R., Goodwin L., Thompson L.S.,
RA Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.,
RA Belas R., Moran M.A., Buchan A., Gonzalez J.M., Schell M.A., Sun F.,
RA Richardson P.;
RT "Complete sequence of chromosome of Silicibacter sp. TM1040.";
RL Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABF63833.1, ECO:0000313|Proteomes:UP000000636}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TM1040 {ECO:0000313|EMBL:ABF63833.1,
RC ECO:0000313|Proteomes:UP000000636};
RX PubMed=17526795; DOI=10.1128/AEM.02580-06;
RA Moran M.A., Belas R., Schell M.A., Gonzalez J.M., Sun F., Sun S.,
RA Binder B.J., Edmonds J., Ye W., Orcutt B., Howard E.C., Meile C.,
RA Palefsky W., Goesmann A., Ren Q., Paulsen I., Ulrich L.E., Thompson L.S.,
RA Saunders E., Buchan A.;
RT "Ecological genomics of marine Roseobacters.";
RL Appl. Environ. Microbiol. 73:4559-4569(2007).
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DR EMBL; CP000377; ABF63833.1; -; Genomic_DNA.
DR RefSeq; WP_011538440.1; NC_008044.1.
DR AlphaFoldDB; Q1GHN3; -.
DR STRING; 292414.TM1040_1100; -.
DR KEGG; sit:TM1040_1100; -.
DR eggNOG; COG1396; Bacteria.
DR HOGENOM; CLU_083309_0_0_5; -.
DR OrthoDB; 9785973at2; -.
DR Proteomes; UP000000636; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 3.30.450.180; -; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR041413; MLTR_LBD.
DR PANTHER; PTHR35010; BLL4672 PROTEIN-RELATED; 1.
DR PANTHER; PTHR35010:SF4; BLL5781 PROTEIN; 1.
DR Pfam; PF13560; HTH_31; 1.
DR Pfam; PF17765; MLTR_LBD; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000636}.
FT DOMAIN 8..62
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 254 AA; 28090 MW; 327303832E9B9967 CRC64;
MSAFGTQLKD WRQLRRMSQL DLALSAEVSA RHLSFLETGR ARPSRDMVLR LSRELLLPQT
EINALLTAAG FAPAYGARDL EDAELAPVRA AVMWMLERHA PYPAMALDRH WQLEAANAPA
RMLLQPVGID LGDSLLEALL HNSGLRSNIL NLREVEQLTL QRLRSELAHF GRDSVIEAHV
EDLRARGAGQ VPEAGPLPAM IPTRYQIGAQ VLSFFSAMSQ FGTVEDIALS ELRIECMFPA
DEATRVALIQ MGAS
//
