ID Q2JGI6_FRACC Unreviewed; 864 AA.
AC Q2JGI6;
DT 07-MAR-2006, integrated into UniProtKB/TrEMBL.
DT 07-MAR-2006, sequence version 1.
DT 24-JAN-2024, entry version 104.
DE SubName: Full=RNA binding S1 {ECO:0000313|EMBL:ABD09606.1};
GN OrderedLocusNames=Francci3_0217 {ECO:0000313|EMBL:ABD09606.1};
OS Frankia casuarinae (strain DSM 45818 / CECT 9043 / HFP020203 / CcI3).
OC Bacteria; Actinomycetota; Actinomycetes; Frankiales; Frankiaceae; Frankia.
OX NCBI_TaxID=106370 {ECO:0000313|EMBL:ABD09606.1, ECO:0000313|Proteomes:UP000001937};
RN [1] {ECO:0000313|EMBL:ABD09606.1, ECO:0000313|Proteomes:UP000001937}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 45818 / CECT 9043 / CcI3
RC {ECO:0000313|Proteomes:UP000001937};
RX PubMed=17151343; DOI=10.1101/gr.5798407;
RA Normand P., Lapierre P., Tisa L.S., Gogarten J.P., Alloisio N.,
RA Bagnarol E., Bassi C.A., Berry A.M., Bickhart D.M., Choisne N., Couloux A.,
RA Cournoyer B., Cruveiller S., Daubin V., Demange N., Francino M.P.,
RA Goltsman E., Huang Y., Kopp O.R., Labarre L., Lapidus A., Lavire C.,
RA Marechal J., Martinez M., Mastronunzio J.E., Mullin B.C., Niemann J.,
RA Pujic P., Rawnsley T., Rouy Z., Schenowitz C., Sellstedt A., Tavares F.,
RA Tomkins J.P., Vallenet D., Valverde C., Wall L.G., Wang Y., Medigue C.,
RA Benson D.R.;
RT "Genome characteristics of facultatively symbiotic Frankia sp. strains
RT reflect host range and host plant biogeography.";
RL Genome Res. 17:7-15(2007).
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DR EMBL; CP000249; ABD09606.1; -; Genomic_DNA.
DR RefSeq; WP_011434686.1; NC_007777.1.
DR AlphaFoldDB; Q2JGI6; -.
DR STRING; 106370.Francci3_0217; -.
DR KEGG; fra:Francci3_0217; -.
DR eggNOG; COG2183; Bacteria.
DR HOGENOM; CLU_009833_0_2_11; -.
DR OMA; RWAWRTR; -.
DR OrthoDB; 9804714at2; -.
DR PhylomeDB; Q2JGI6; -.
DR Proteomes; UP000001937; Chromosome.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd05685; S1_Tex; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR044146; S1_Tex.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12836; HHH_3; 1.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR PROSITE; PS50126; S1; 1.
DR PROSITE; PS50889; S4; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001937};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182}.
FT DOMAIN 662..731
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT REGION 734..864
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 734..751
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 864 AA; 91590 MW; C618CEA47B19E958 CRC64;
MTTTSVPQRS IHQRIAEELG VRQGQVTAAV DLLDGGATVP FIARYRKEAT GTLDDTQLRT
LEERLRYLRE LEDRRAAILE SIRSQGKLDD ALEAQILAAD SKARLEDIYL PFKPKRRTRA
QIAREAGLEP LAESLLGDPS LDPYATATAY VDPEKGVADA GAALEGARAI LVERFAEDAD
LIGTLRERMW SRGVLVSRVR EGKEEAGAKF SDYFDFSEPF TSLPSHRILA AFRGEKEEIL
DLTLEPDVPA EPDAAPPPGP TDYETRIAEA FGISDAGRPA DRWLLDTVRW AWRTRILVHL
GIDLRMRLWT AAEDTAVRVF AANLRDLLLA APAGTRATMG LDPGYRTGVK VAVVDPTGKV
VATDTIHPHV PARRWDESIA TLARLAREHR VDLISIGNGT ASRETDKLAE DLIRRHSELS
LTKVTVSEAG ASVYSASAYA AAELPGLDVS LRGAVSIARR LQDPLAELVK IDPKSIGVGQ
YQHDLSESRL SSSLDAVVED CVNAVGVDVN TASAPLLTRV SGIGASLAES VVRHRDTHGP
FQTRAALKDV PRLGPKAFEQ CAGFLRIPDG DDPLDASSVH PESYPVVRRI LAATSGDLGS
LIGNGAVLRA LKPSEFVDDT FGLPTVTDIL AELEKPGRDP RPAFRTAAFT EGIETLADLV
PGMTLEGTVT NVAAFGAFVD IGVHQDGLVH VSAMSKNFVS DPREVVKPGD IVTVKVLDVD
IPRKRISLTL RLDDEAGAGG PGRRDGEGDR RGAAGAGAGR GGSRDHGDRR NGGRGTASAG
AGRGGSRDHG DRRNGGRGTA SGERGGAGGR GAGGAGGRGA GGRNGSGGRG GSSVPDGAIA
EALRRAGIVN GDQITLGESG RKRG
//