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Database: UniProt
Entry: Q2JGI6_FRACC
LinkDB: Q2JGI6_FRACC
Original site: Q2JGI6_FRACC 
ID   Q2JGI6_FRACC            Unreviewed;       864 AA.
AC   Q2JGI6;
DT   07-MAR-2006, integrated into UniProtKB/TrEMBL.
DT   07-MAR-2006, sequence version 1.
DT   24-JAN-2024, entry version 104.
DE   SubName: Full=RNA binding S1 {ECO:0000313|EMBL:ABD09606.1};
GN   OrderedLocusNames=Francci3_0217 {ECO:0000313|EMBL:ABD09606.1};
OS   Frankia casuarinae (strain DSM 45818 / CECT 9043 / HFP020203 / CcI3).
OC   Bacteria; Actinomycetota; Actinomycetes; Frankiales; Frankiaceae; Frankia.
OX   NCBI_TaxID=106370 {ECO:0000313|EMBL:ABD09606.1, ECO:0000313|Proteomes:UP000001937};
RN   [1] {ECO:0000313|EMBL:ABD09606.1, ECO:0000313|Proteomes:UP000001937}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 45818 / CECT 9043 / CcI3
RC   {ECO:0000313|Proteomes:UP000001937};
RX   PubMed=17151343; DOI=10.1101/gr.5798407;
RA   Normand P., Lapierre P., Tisa L.S., Gogarten J.P., Alloisio N.,
RA   Bagnarol E., Bassi C.A., Berry A.M., Bickhart D.M., Choisne N., Couloux A.,
RA   Cournoyer B., Cruveiller S., Daubin V., Demange N., Francino M.P.,
RA   Goltsman E., Huang Y., Kopp O.R., Labarre L., Lapidus A., Lavire C.,
RA   Marechal J., Martinez M., Mastronunzio J.E., Mullin B.C., Niemann J.,
RA   Pujic P., Rawnsley T., Rouy Z., Schenowitz C., Sellstedt A., Tavares F.,
RA   Tomkins J.P., Vallenet D., Valverde C., Wall L.G., Wang Y., Medigue C.,
RA   Benson D.R.;
RT   "Genome characteristics of facultatively symbiotic Frankia sp. strains
RT   reflect host range and host plant biogeography.";
RL   Genome Res. 17:7-15(2007).
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DR   EMBL; CP000249; ABD09606.1; -; Genomic_DNA.
DR   RefSeq; WP_011434686.1; NC_007777.1.
DR   AlphaFoldDB; Q2JGI6; -.
DR   STRING; 106370.Francci3_0217; -.
DR   KEGG; fra:Francci3_0217; -.
DR   eggNOG; COG2183; Bacteria.
DR   HOGENOM; CLU_009833_0_2_11; -.
DR   OMA; RWAWRTR; -.
DR   OrthoDB; 9804714at2; -.
DR   PhylomeDB; Q2JGI6; -.
DR   Proteomes; UP000001937; Chromosome.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR   CDD; cd05685; S1_Tex; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR   Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR   Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR   Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR   InterPro; IPR041692; HHH_9.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR010994; RuvA_2-like.
DR   InterPro; IPR003029; S1_domain.
DR   InterPro; IPR044146; S1_Tex.
DR   InterPro; IPR023323; Tex-like_dom_sf.
DR   InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR   InterPro; IPR018974; Tex-like_N.
DR   InterPro; IPR032639; Tex_YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR   PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR   Pfam; PF12836; HHH_3; 1.
DR   Pfam; PF17674; HHH_9; 1.
DR   Pfam; PF00575; S1; 1.
DR   Pfam; PF09371; Tex_N; 1.
DR   Pfam; PF16921; Tex_YqgF; 1.
DR   SMART; SM00316; S1; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR   SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR   PROSITE; PS50126; S1; 1.
DR   PROSITE; PS50889; S4; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000001937};
KW   RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182}.
FT   DOMAIN          662..731
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   REGION          734..864
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        734..751
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   864 AA;  91590 MW;  C618CEA47B19E958 CRC64;
     MTTTSVPQRS IHQRIAEELG VRQGQVTAAV DLLDGGATVP FIARYRKEAT GTLDDTQLRT
     LEERLRYLRE LEDRRAAILE SIRSQGKLDD ALEAQILAAD SKARLEDIYL PFKPKRRTRA
     QIAREAGLEP LAESLLGDPS LDPYATATAY VDPEKGVADA GAALEGARAI LVERFAEDAD
     LIGTLRERMW SRGVLVSRVR EGKEEAGAKF SDYFDFSEPF TSLPSHRILA AFRGEKEEIL
     DLTLEPDVPA EPDAAPPPGP TDYETRIAEA FGISDAGRPA DRWLLDTVRW AWRTRILVHL
     GIDLRMRLWT AAEDTAVRVF AANLRDLLLA APAGTRATMG LDPGYRTGVK VAVVDPTGKV
     VATDTIHPHV PARRWDESIA TLARLAREHR VDLISIGNGT ASRETDKLAE DLIRRHSELS
     LTKVTVSEAG ASVYSASAYA AAELPGLDVS LRGAVSIARR LQDPLAELVK IDPKSIGVGQ
     YQHDLSESRL SSSLDAVVED CVNAVGVDVN TASAPLLTRV SGIGASLAES VVRHRDTHGP
     FQTRAALKDV PRLGPKAFEQ CAGFLRIPDG DDPLDASSVH PESYPVVRRI LAATSGDLGS
     LIGNGAVLRA LKPSEFVDDT FGLPTVTDIL AELEKPGRDP RPAFRTAAFT EGIETLADLV
     PGMTLEGTVT NVAAFGAFVD IGVHQDGLVH VSAMSKNFVS DPREVVKPGD IVTVKVLDVD
     IPRKRISLTL RLDDEAGAGG PGRRDGEGDR RGAAGAGAGR GGSRDHGDRR NGGRGTASAG
     AGRGGSRDHG DRRNGGRGTA SGERGGAGGR GAGGAGGRGA GGRNGSGGRG GSSVPDGAIA
     EALRRAGIVN GDQITLGESG RKRG
//
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