ID Q2JHP2_SYNJB Unreviewed; 397 AA.
AC Q2JHP2;
DT 07-MAR-2006, integrated into UniProtKB/TrEMBL.
DT 07-MAR-2006, sequence version 1.
DT 27-MAR-2024, entry version 76.
DE SubName: Full=ISSoc1, transposase {ECO:0000313|EMBL:ABD01326.1};
GN OrderedLocusNames=CYB_0329 {ECO:0000313|EMBL:ABD01326.1};
OS Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium
OS Yellowstone B-Prime).
OC Bacteria; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae;
OC Synechococcus.
OX NCBI_TaxID=321332 {ECO:0000313|EMBL:ABD01326.1, ECO:0000313|Proteomes:UP000001938};
RN [1] {ECO:0000313|EMBL:ABD01326.1, ECO:0000313|Proteomes:UP000001938}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JA-2-3B'a(2-13) {ECO:0000313|Proteomes:UP000001938};
RX PubMed=18059494; DOI=10.1038/ismej.2007.46;
RA Bhaya D., Grossman A.R., Steunou A.S., Khuri N., Cohan F.M., Hamamura N.,
RA Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.;
RT "Population level functional diversity in a microbial community revealed by
RT comparative genomic and metagenomic analyses.";
RL ISME J. 1:703-713(2007).
CC -!- SIMILARITY: In the C-terminal section; belongs to the transposase 35
CC family. {ECO:0000256|ARBA:ARBA00008761}.
CC -!- SIMILARITY: In the N-terminal section; belongs to the transposase 2
CC family. {ECO:0000256|ARBA:ARBA00011044}.
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DR EMBL; CP000240; ABD01326.1; -; Genomic_DNA.
DR RefSeq; WP_011431995.1; NC_007776.1.
DR AlphaFoldDB; Q2JHP2; -.
DR STRING; 321332.CYB_0329; -.
DR KEGG; cyb:CYB_0329; -.
DR eggNOG; COG0675; Bacteria.
DR HOGENOM; CLU_032903_3_2_3; -.
DR OrthoDB; 534575at2; -.
DR Proteomes; UP000001938; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0032196; P:transposition; IEA:UniProtKB-KW.
DR InterPro; IPR010095; Cas12f1-like_TNB.
DR InterPro; IPR001959; Transposase.
DR NCBIfam; NF040570; guided_TnpB; 1.
DR NCBIfam; TIGR01766; IS200/IS605 family accessory protein TnpB-like domain; 1.
DR PANTHER; PTHR30405:SF11; TNPB-LIKE PROTEIN MJ1635; 1.
DR PANTHER; PTHR30405; TRANSPOSASE; 1.
DR Pfam; PF01385; OrfB_IS605; 1.
DR Pfam; PF07282; OrfB_Zn_ribbon; 1.
PE 3: Inferred from homology;
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000001938};
KW Transposition {ECO:0000256|ARBA:ARBA00022578}.
FT DOMAIN 157..259
FT /note="Probable transposase IS891/IS1136/IS1341"
FT /evidence="ECO:0000259|Pfam:PF01385"
FT DOMAIN 293..363
FT /note="Cas12f1-like TNB"
FT /evidence="ECO:0000259|Pfam:PF07282"
SQ SEQUENCE 397 AA; 44666 MW; 520D31022585F492 CRC64;
MTQVLTVPCK LKVSQSQAAK LDATMDAFVQ ALNWVNQNTP EKVVNAVKLQ SLCYYQIRAR
FGLSSNLAQQ VCRRLAGARK VARQKNRPVK AFKRGFATYD ARIFSFREKD WTVSLTTVGG
RERFELAIGR YQREQLAGSN PKSATLVKRK DGSYSIQICV ETEPSPPQGT DRVLGVDLGR
TDIAHTSEGD NWNGQQLNKV RDHHSRLRAA LQRKASKGTR SSRRRCRELL QRLSGKERRF
QAWVNHRISK AIVSRAKTTN SAIALEDLTG IRERVNQQPR SKAERRRTNN WAFYQLRMFV
VYKAAIAGVP VVLAPPAYTS QTCHRCLHIH PDPTQSYRSG KKFKCGHCGW EGDADLNGAN
VIALLGAAVN QPRGSWLACQ LQGYRKLALY CEAVRVG
//
