ID Q2JNQ2_SYNJB Unreviewed; 405 AA.
AC Q2JNQ2;
DT 07-MAR-2006, integrated into UniProtKB/TrEMBL.
DT 07-MAR-2006, sequence version 1.
DT 27-MAR-2024, entry version 70.
DE SubName: Full=ISSoc1, transposase {ECO:0000313|EMBL:ABD01607.1};
GN OrderedLocusNames=CYB_0620 {ECO:0000313|EMBL:ABD01607.1};
OS Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium
OS Yellowstone B-Prime).
OC Bacteria; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae;
OC Synechococcus.
OX NCBI_TaxID=321332 {ECO:0000313|EMBL:ABD01607.1, ECO:0000313|Proteomes:UP000001938};
RN [1] {ECO:0000313|EMBL:ABD01607.1, ECO:0000313|Proteomes:UP000001938}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JA-2-3B'a(2-13) {ECO:0000313|Proteomes:UP000001938};
RX PubMed=18059494; DOI=10.1038/ismej.2007.46;
RA Bhaya D., Grossman A.R., Steunou A.S., Khuri N., Cohan F.M., Hamamura N.,
RA Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.;
RT "Population level functional diversity in a microbial community revealed by
RT comparative genomic and metagenomic analyses.";
RL ISME J. 1:703-713(2007).
CC -!- SIMILARITY: In the C-terminal section; belongs to the transposase 35
CC family. {ECO:0000256|ARBA:ARBA00008761}.
CC -!- SIMILARITY: In the N-terminal section; belongs to the transposase 2
CC family. {ECO:0000256|ARBA:ARBA00011044}.
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DR EMBL; CP000240; ABD01607.1; -; Genomic_DNA.
DR RefSeq; WP_011432266.1; NC_007776.1.
DR AlphaFoldDB; Q2JNQ2; -.
DR KEGG; cyb:CYB_0620; -.
DR eggNOG; COG0675; Bacteria.
DR HOGENOM; CLU_032903_3_2_3; -.
DR OrthoDB; 534575at2; -.
DR Proteomes; UP000001938; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0032196; P:transposition; IEA:UniProtKB-KW.
DR InterPro; IPR010095; Cas12f1-like_TNB.
DR InterPro; IPR001959; Transposase.
DR NCBIfam; NF040570; guided_TnpB; 1.
DR NCBIfam; TIGR01766; IS200/IS605 family accessory protein TnpB-like domain; 1.
DR PANTHER; PTHR30405:SF11; TNPB-LIKE PROTEIN MJ1635; 1.
DR PANTHER; PTHR30405; TRANSPOSASE; 1.
DR Pfam; PF01385; OrfB_IS605; 1.
DR Pfam; PF07282; OrfB_Zn_ribbon; 1.
PE 3: Inferred from homology;
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000001938};
KW Transposition {ECO:0000256|ARBA:ARBA00022578}.
FT DOMAIN 165..267
FT /note="Probable transposase IS891/IS1136/IS1341"
FT /evidence="ECO:0000259|Pfam:PF01385"
FT DOMAIN 301..371
FT /note="Cas12f1-like TNB"
FT /evidence="ECO:0000259|Pfam:PF07282"
SQ SEQUENCE 405 AA; 45533 MW; 9F0ED09D48D5607F CRC64;
MSQVLSISCK LKVSPSQAAK LDETLDAFGQ ALNWVNQNTP EKVVNAVKLQ SLCYREIRAR
FGLSSNLART TSRLRDQQVC RRLAGARKVA RQKNRPVKTF KGGFATYDAR IFSFREKDWT
VSLTTVEGRE RFELAIGRYQ RERLAGSNPK SATLVKRKDG SYSIQICVET EPSPPQRTGR
VLGVDLGRTD IAHTSEGDNW NGQQLNRIRD HYSKLRAALQ RKASKGTRSS RRRCRQLLQR
LSGKERRFQT WVNHRISKAI VSRAKATNSA IALEDLTGIR KRVNQQPRSK AERRRANSWA
FYQLRQFLEY KARVAGVSLV LVPPAYTSQT CHKCLHIHPD PAQSYRSGKK FKCGHCGWEG
DADLNGANVI ALLGAAVNQP GGPGLFCSLV EQSRLRATES PLRTA
//
