ID Q31J80_HYDCU Unreviewed; 507 AA.
AC Q31J80;
DT 06-DEC-2005, integrated into UniProtKB/TrEMBL.
DT 06-DEC-2005, sequence version 1.
DT 27-MAR-2024, entry version 98.
DE SubName: Full=Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor {ECO:0000313|EMBL:ABB40793.1};
GN OrderedLocusNames=Tcr_0197 {ECO:0000313|EMBL:ABB40793.1};
OS Hydrogenovibrio crunogenus (strain DSM 25203 / XCL-2) (Thiomicrospira
OS crunogena).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales;
OC Piscirickettsiaceae; Hydrogenovibrio.
OX NCBI_TaxID=317025 {ECO:0000313|EMBL:ABB40793.1};
RN [1] {ECO:0000313|EMBL:ABB40793.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=XCL-2 {ECO:0000313|EMBL:ABB40793.1};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.,
RA Hauser L., Kyrpides N., Lykidis A., Scott K.M., Sievert S., Kerfeld C.,
RA Freyermuth S., Dobrinski K., Boller A., Fitzpatrick K., Thoma P., Moore J.,
RA Richardson P.;
RT "Complete sequence of Thiomicrospira crunogena XCL-2.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP000109; ABB40793.1; -; Genomic_DNA.
DR AlphaFoldDB; Q31J80; -.
DR STRING; 317025.Tcr_0197; -.
DR KEGG; tcx:Tcr_0197; -.
DR eggNOG; COG2199; Bacteria.
DR HOGENOM; CLU_000445_11_4_6; -.
DR OrthoDB; 9812260at2; -.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR CDD; cd01949; GGDEF; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR013655; PAS_fold_3.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR NCBIfam; TIGR00254; GGDEF; 1.
DR NCBIfam; TIGR00229; sensory_box; 2.
DR PANTHER; PTHR46663; DIGUANYLATE CYCLASE DGCT-RELATED; 1.
DR PANTHER; PTHR46663:SF2; GGDEF DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF08447; PAS_3; 1.
DR Pfam; PF08448; PAS_4; 1.
DR SMART; SM00267; GGDEF; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50113; PAC; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils}; Membrane {ECO:0000256|SAM:Phobius};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 12..31
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 43..60
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 167..219
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 373..506
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
FT COILED 60..94
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 507 AA; 58684 MW; 17610292751B2FC1 CRC64;
MKTGNSSSFR YFSAFFLIVF GFLFMASQYP IAPITEVDIN WNLYFQIAIA LFFLFAFIGY
KRFQKLNQDT LRQAEEAKQK LRTLKRQHEL EKKRLSFVLD CGRLAYWEWD IKNNQAYFSN
LWQDMIGFTE HDFPQDLHAW QARIHPLDQE QVQKKLLKLL SHQITDYEDT HRVMDVNGDY
IWVYDRGQTV TNELGNVEKL SCVRLNITQQ KQLEEELTLD KILLENTQEA IAITNENLSF
IRTNPAFHDA FGLTQSDLAK MTLKDLLDNL QDEPPQDILS QVDKDLAWRG ELTLHHTNGE
LARSSLVDCQ KVIHQTTQTT HYALVYTDIT ELKQTQQELS FLANTDIVTG LPNRNYFYQA
LEEWLEAFKD SGNKFTLMFL DLDNFKTVND TLGHDTGDHL LKSVSELIAE HIAEDTLFAR
VGGDEFVILC RAYTTPEQLN EIGQNLNQLL SQPFNIGDHE IKIGSSIGIA LFPDHGSDKE
TLLKHADQAM YQAKNAGKGR YRIYQAW
//
