ID Q4H2S1_CIOIN Unreviewed; 525 AA.
AC Q4H2S1; A0A1W3JP60;
DT 30-AUG-2005, integrated into UniProtKB/TrEMBL.
DT 30-AUG-2005, sequence version 1.
DT 24-JAN-2024, entry version 101.
DE SubName: Full=HMG transcription factor SoxC {ECO:0000313|Ensembl:ENSCINP00000016177.3};
DE SubName: Full=Transcription factor protein {ECO:0000313|EMBL:BAE06706.1};
GN Name=Ci-SoxC {ECO:0000313|EMBL:BAE06706.1};
GN Synonyms=soxC {ECO:0000313|Ensembl:ENSCINP00000016177.3};
OS Ciona intestinalis (Transparent sea squirt) (Ascidia intestinalis).
OC Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
OC Cionidae; Ciona.
OX NCBI_TaxID=7719 {ECO:0000313|EMBL:BAE06706.1};
RN [1] {ECO:0000313|Proteomes:UP000008144}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=12481130; DOI=10.1126/science.1080049;
RA Dehal P., Satou Y., Campbell R.K., Chapman J., Degnan B., De Tomaso A.,
RA Davidson B., Di Gregorio A., Gelpke M., Goodstein D.M., Harafuji N.,
RA Hastings K.E., Ho I., Hotta K., Huang W., Kawashima T., Lemaire P.,
RA Martinez D., Meinertzhagen I.A., Necula S., Nonaka M., Putnam N., Rash S.,
RA Saiga H., Satake M., Terry A., Yamada L., Wang H.G., Awazu S., Azumi K.,
RA Boore J., Branno M., Chin-Bow S., DeSantis R., Doyle S., Francino P.,
RA Keys D.N., Haga S., Hayashi H., Hino K., Imai K.S., Inaba K., Kano S.,
RA Kobayashi K., Kobayashi M., Lee B.I., Makabe K.W., Manohar C., Matassi G.,
RA Medina M., Mochizuki Y., Mount S., Morishita T., Miura S., Nakayama A.,
RA Nishizaka S., Nomoto H., Ohta F., Oishi K., Rigoutsos I., Sano M.,
RA Sasaki A., Sasakura Y., Shoguchi E., Shin-i T., Spagnuolo A., Stainier D.,
RA Suzuki M.M., Tassy O., Takatori N., Tokuoka M., Yagi K., Yoshizaki F.,
RA Wada S., Zhang C., Hyatt P.D., Larimer F., Detter C., Doggett N.,
RA Glavina T., Hawkins T., Richardson P., Lucas S., Kohara Y., Levine M.,
RA Satoh N., Rokhsar D.S.;
RT "The draft genome of Ciona intestinalis: insights into chordate and
RT vertebrate origins.";
RL Science 298:2157-2167(2002).
RN [2] {ECO:0000313|EMBL:BAE06706.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=12736827; DOI=10.1007/s00427-003-0330-z;
RA Satou Y., Satoh N.;
RT "Genomewide surveys of developmentally relevant genes in Ciona
RT intestinalis.";
RL Dev. Genes Evol. 213:211-212(2003).
RN [3] {ECO:0000313|EMBL:BAE06706.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=15269171; DOI=10.1242/dev.01270;
RA Imai K.S., Hino K., Yagi K., Satoh N., Satou Y.;
RT "Gene expression profiles of transcription factors and signaling molecules
RT in the ascidian embryo: towards a comprehensive understanding of gene
RT networks.";
RL Development 131:4047-4058(2004).
RN [4] {ECO:0000313|EMBL:BAE06706.1}
RP NUCLEOTIDE SEQUENCE.
RA Satou Y.;
RT "Expressed genes in Ciona intestinalis.";
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|Ensembl:ENSCINP00000016177.3}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; EAAA01002408; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AB210701; BAE06706.1; -; mRNA.
DR RefSeq; NP_001122334.1; NM_001128862.1.
DR RefSeq; XP_009858901.1; XM_009860599.2.
DR STRING; 7719.ENSCINP00000016177; -.
DR Ensembl; ENSCINT00000016177.3; ENSCINP00000016177.3; ENSCING00000007901.3.
DR GeneID; 445745; -.
DR KEGG; cin:445745; -.
DR CTD; 445745; -.
DR GeneTree; ENSGT00940000173514; -.
DR HOGENOM; CLU_518695_0_0_1; -.
DR OMA; IWSQIER; -.
DR OrthoDB; 3039455at2759; -.
DR Proteomes; UP000008144; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0002009; P:morphogenesis of an epithelium; IBA:GO_Central.
DR GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR45803; SOX100B; 1.
DR PANTHER; PTHR45803:SF5; SOX100B; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU00267}; Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000008144}.
FT DOMAIN 144..212
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 144..212
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 18..65
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 90..111
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 214..236
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 261..282
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 42..64
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 525 AA; 58646 MW; 61E8FB04246255F8 CRC64;
MASTSRLTKI SAELMSLHAG QNLDGNPGSP ESGLGSDWDF DSDEIVQSSS VATPRRSIDA
LHASSPSPTL ECILDCPDVS GVDVFDSPIK KEADFKDPKP RQSPNKNKRE NILNELKNLP
ATKIKLPPPS RSSQKKLAAR PGYIKRPMNA FMIWSQIERR KIMEKTPELH NAEISRNLGR
IWREQADSIK RPFLIEAERL RLQHMCDYPD YKYKPKKKAK GKKCDSSENS TFSYLHNDPD
QSMEIIETNT EALKAEVKVS SKRLPKKRKL SQSKPSLPEI KPTVVASINP IQNNSGNSEP
QAKEVTATTN NLLTAVKVEP RVPPLPITPA TIVTAVPSKR GRFEVHTPSP CDTNQRIGLV
HGTVFKTVTE GNRQFIIVSG ANDVISDVTN SSLVSTQRTS TPCQQKQIIN ANFVPITNDC
GQEKVYNIVR GCIQVASQEP TNSTTQKRVE PDVPTTFANM GDDFRNEYLK EDHFIDQITL
SSGIAYADPC RRKSHFEFSD YDTDEVKRMI ESSDLAWLRD DICCP
//