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Database: UniProt
Entry: Q4H2S1_CIOIN
LinkDB: Q4H2S1_CIOIN
Original site: Q4H2S1_CIOIN 
ID   Q4H2S1_CIOIN            Unreviewed;       525 AA.
AC   Q4H2S1; A0A1W3JP60;
DT   30-AUG-2005, integrated into UniProtKB/TrEMBL.
DT   30-AUG-2005, sequence version 1.
DT   24-JAN-2024, entry version 101.
DE   SubName: Full=HMG transcription factor SoxC {ECO:0000313|Ensembl:ENSCINP00000016177.3};
DE   SubName: Full=Transcription factor protein {ECO:0000313|EMBL:BAE06706.1};
GN   Name=Ci-SoxC {ECO:0000313|EMBL:BAE06706.1};
GN   Synonyms=soxC {ECO:0000313|Ensembl:ENSCINP00000016177.3};
OS   Ciona intestinalis (Transparent sea squirt) (Ascidia intestinalis).
OC   Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
OC   Cionidae; Ciona.
OX   NCBI_TaxID=7719 {ECO:0000313|EMBL:BAE06706.1};
RN   [1] {ECO:0000313|Proteomes:UP000008144}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=12481130; DOI=10.1126/science.1080049;
RA   Dehal P., Satou Y., Campbell R.K., Chapman J., Degnan B., De Tomaso A.,
RA   Davidson B., Di Gregorio A., Gelpke M., Goodstein D.M., Harafuji N.,
RA   Hastings K.E., Ho I., Hotta K., Huang W., Kawashima T., Lemaire P.,
RA   Martinez D., Meinertzhagen I.A., Necula S., Nonaka M., Putnam N., Rash S.,
RA   Saiga H., Satake M., Terry A., Yamada L., Wang H.G., Awazu S., Azumi K.,
RA   Boore J., Branno M., Chin-Bow S., DeSantis R., Doyle S., Francino P.,
RA   Keys D.N., Haga S., Hayashi H., Hino K., Imai K.S., Inaba K., Kano S.,
RA   Kobayashi K., Kobayashi M., Lee B.I., Makabe K.W., Manohar C., Matassi G.,
RA   Medina M., Mochizuki Y., Mount S., Morishita T., Miura S., Nakayama A.,
RA   Nishizaka S., Nomoto H., Ohta F., Oishi K., Rigoutsos I., Sano M.,
RA   Sasaki A., Sasakura Y., Shoguchi E., Shin-i T., Spagnuolo A., Stainier D.,
RA   Suzuki M.M., Tassy O., Takatori N., Tokuoka M., Yagi K., Yoshizaki F.,
RA   Wada S., Zhang C., Hyatt P.D., Larimer F., Detter C., Doggett N.,
RA   Glavina T., Hawkins T., Richardson P., Lucas S., Kohara Y., Levine M.,
RA   Satoh N., Rokhsar D.S.;
RT   "The draft genome of Ciona intestinalis: insights into chordate and
RT   vertebrate origins.";
RL   Science 298:2157-2167(2002).
RN   [2] {ECO:0000313|EMBL:BAE06706.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=12736827; DOI=10.1007/s00427-003-0330-z;
RA   Satou Y., Satoh N.;
RT   "Genomewide surveys of developmentally relevant genes in Ciona
RT   intestinalis.";
RL   Dev. Genes Evol. 213:211-212(2003).
RN   [3] {ECO:0000313|EMBL:BAE06706.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=15269171; DOI=10.1242/dev.01270;
RA   Imai K.S., Hino K., Yagi K., Satoh N., Satou Y.;
RT   "Gene expression profiles of transcription factors and signaling molecules
RT   in the ascidian embryo: towards a comprehensive understanding of gene
RT   networks.";
RL   Development 131:4047-4058(2004).
RN   [4] {ECO:0000313|EMBL:BAE06706.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Satou Y.;
RT   "Expressed genes in Ciona intestinalis.";
RL   Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [5] {ECO:0000313|Ensembl:ENSCINP00000016177.3}
RP   IDENTIFICATION.
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   EMBL; EAAA01002408; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AB210701; BAE06706.1; -; mRNA.
DR   RefSeq; NP_001122334.1; NM_001128862.1.
DR   RefSeq; XP_009858901.1; XM_009860599.2.
DR   STRING; 7719.ENSCINP00000016177; -.
DR   Ensembl; ENSCINT00000016177.3; ENSCINP00000016177.3; ENSCING00000007901.3.
DR   GeneID; 445745; -.
DR   KEGG; cin:445745; -.
DR   CTD; 445745; -.
DR   GeneTree; ENSGT00940000173514; -.
DR   HOGENOM; CLU_518695_0_0_1; -.
DR   OMA; IWSQIER; -.
DR   OrthoDB; 3039455at2759; -.
DR   Proteomes; UP000008144; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0002009; P:morphogenesis of an epithelium; IBA:GO_Central.
DR   GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR   InterPro; IPR009071; HMG_box_dom.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   PANTHER; PTHR45803; SOX100B; 1.
DR   PANTHER; PTHR45803:SF5; SOX100B; 1.
DR   Pfam; PF00505; HMG_box; 1.
DR   SMART; SM00398; HMG; 1.
DR   SUPFAM; SSF47095; HMG-box; 1.
DR   PROSITE; PS50118; HMG_BOX_2; 1.
PE   2: Evidence at transcript level;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW   ProRule:PRU00267}; Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008144}.
FT   DOMAIN          144..212
FT                   /note="HMG box"
FT                   /evidence="ECO:0000259|PROSITE:PS50118"
FT   DNA_BIND        144..212
FT                   /note="HMG box"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT   REGION          18..65
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          90..111
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          214..236
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          261..282
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        42..64
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   525 AA;  58646 MW;  61E8FB04246255F8 CRC64;
     MASTSRLTKI SAELMSLHAG QNLDGNPGSP ESGLGSDWDF DSDEIVQSSS VATPRRSIDA
     LHASSPSPTL ECILDCPDVS GVDVFDSPIK KEADFKDPKP RQSPNKNKRE NILNELKNLP
     ATKIKLPPPS RSSQKKLAAR PGYIKRPMNA FMIWSQIERR KIMEKTPELH NAEISRNLGR
     IWREQADSIK RPFLIEAERL RLQHMCDYPD YKYKPKKKAK GKKCDSSENS TFSYLHNDPD
     QSMEIIETNT EALKAEVKVS SKRLPKKRKL SQSKPSLPEI KPTVVASINP IQNNSGNSEP
     QAKEVTATTN NLLTAVKVEP RVPPLPITPA TIVTAVPSKR GRFEVHTPSP CDTNQRIGLV
     HGTVFKTVTE GNRQFIIVSG ANDVISDVTN SSLVSTQRTS TPCQQKQIIN ANFVPITNDC
     GQEKVYNIVR GCIQVASQEP TNSTTQKRVE PDVPTTFANM GDDFRNEYLK EDHFIDQITL
     SSGIAYADPC RRKSHFEFSD YDTDEVKRMI ESSDLAWLRD DICCP
//
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