ID Q4PL95_ARATH Unreviewed; 276 AA.
AC Q4PL95;
DT 19-JUL-2005, integrated into UniProtKB/TrEMBL.
DT 19-JUL-2005, sequence version 1.
DT 27-MAR-2024, entry version 124.
DE SubName: Full=Autophagy-like protein {ECO:0000313|EMBL:AEC09812.1};
GN OrderedLocusNames=At2g40313 {ECO:0000313|EMBL:AEC09812.1}, At2g40316
GN {ECO:0000313|Araport:AT2G40316, ECO:0000313|EMBL:AEC09812.1};
GN ORFNames=T7M7.21 {ECO:0000313|EMBL:AEC09812.1}, T7M7_21
GN {ECO:0000313|EMBL:AEC09812.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAY82252.1};
RN [1] {ECO:0000313|EMBL:AEC09812.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S., Shea T.P., Benito M.I., Town C.D.,
RA Fujii C.Y., Mason T., Bowman C.L., Barnstead M., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2] {ECO:0000313|EMBL:AAY82252.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=16244158; DOI=10.1104/pp.105.063479;
RA Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L.,
RA Ayele M., Haas B.J., Wu H.C., Town C.D.;
RT "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2
RT reveals numerous transcript variants.";
RL Plant Physiol. 139:1323-1337(2005).
RN [3] {ECO:0000313|EMBL:AAY82252.1}
RP NUCLEOTIDE SEQUENCE.
RA Xiao Y., Smith S.R., Ishmael N., Kumar N., Redman J., Riedmuller S.,
RA Utterback T., Whitelaw C.A., Fraser C.M., Town C.D.;
RL Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:BAE99557.1}
RP NUCLEOTIDE SEQUENCE.
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA Hayashizaki Y., Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:AEC09812.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:AEC09812.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [7] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004167}; Single-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004167}.
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DR EMBL; DQ069793; AAY82252.1; -; mRNA.
DR EMBL; CP002685; AEC09812.1; -; Genomic_DNA.
DR EMBL; AK227563; BAE99557.1; -; mRNA.
DR RefSeq; NP_181562.4; NM_129591.5.
DR AlphaFoldDB; Q4PL95; -.
DR IntAct; Q4PL95; 10.
DR PaxDb; 3702-AT2G40316-1; -.
DR ProteomicsDB; 177645; -.
DR EnsemblPlants; AT2G40316.1; AT2G40316.1; AT2G40316.
DR GeneID; 818624; -.
DR Gramene; AT2G40316.1; AT2G40316.1; AT2G40316.
DR Araport; AT2G40316; -.
DR TAIR; AT2G40316; -.
DR eggNOG; ENOG502QUYE; Eukaryota.
DR OMA; SQCEFSF; -.
DR OrthoDB; 24643at2759; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q4PL95; baseline and differential.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR InterPro; IPR018939; Autophagy-rel_prot_27.
DR PANTHER; PTHR15071:SF0; CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR; 1.
DR PANTHER; PTHR15071; MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER; 1.
DR Pfam; PF09451; ATG27; 1.
PE 1: Evidence at protein level;
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q4PL95,
KW ECO:0007829|ProteomicsDB:Q4PL95};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}.
FT SIGNAL 1..24
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 25..276
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5014309419"
FT TRANSMEM 199..223
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
SQ SEQUENCE 276 AA; 30043 MW; 45C3393A610D4B17 CRC64;
MSGKLWIPRF ILITLLFISS RVNSQCEFSF TGRNKVFHFN LASSIRNYPH GVLSEDGFYK
VEANSSVLWF QLCDVLIFNH DPPRCVGCED CGGPSHCGTS CSALVSENVR GYDVCTSLGH
ASSTKVDIID KEDPGKGVIV QMSTGNRNQN CSLSVSVICQ KTKVDGPLTL AKSGTCQYAT
QLRHPAGCAA AISGHSSGWG WFSTLLIIIL CLFGAYLVGG AVYRYFSLGI RGIDVIPNMD
YWATVPHSIQ SCFGSLFSRF GGSIRGQQTS YSQVNF
//
