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Database: UniProt
Entry: Q5K5B6
LinkDB: Q5K5B6
Original site: Q5K5B6 
ID   RH57_ORYSJ              Reviewed;         540 AA.
AC   Q5K5B6; A0A0P0X9L4; Q8LIE5;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   03-APR-2007, sequence version 2.
DT   16-OCT-2019, entry version 86.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 57;
DE            EC=3.6.4.13;
GN   OrderedLocusNames=Os07g0647900, LOC_Os07g45360;
GN   ORFNames=OJ1316_A04.119, OsJ_25369, P0427D10.102;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
RA   McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
RA   Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
RA   Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
RA   Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using
RT   next generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
RA   Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
RA   Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
RA   Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
RA   Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
RA   Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
RA   Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
RA   Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
RA   Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
RA   Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA   Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 473-540.
RX   PubMed=12643350; DOI=10.1038/sj.cr.7290151;
RA   Lin F., Xu S.L., Ni W.M., Chu Z.Q., Xu Z.H., Xue H.W.;
RT   "Identification of ABA-responsive genes in rice shoots via cDNA
RT   macroar-.";
RL   Cell Res. 13:59-68(2003).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD
CC       box family of RNA helicases and controls ATP binding and
CC       hydrolysis.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX52/ROK1
CC       subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AK063527; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
DR   EMBL; AP003822; BAC07000.1; -; Genomic_DNA.
DR   EMBL; AP004272; BAC20037.1; -; Genomic_DNA.
DR   EMBL; AP008213; BAF22387.1; -; Genomic_DNA.
DR   EMBL; AP014963; BAT02928.1; -; Genomic_DNA.
DR   EMBL; CM000144; EAZ40891.1; -; Genomic_DNA.
DR   EMBL; AK063527; -; NOT_ANNOTATED_CDS; mRNA.
DR   EMBL; AJ437266; CAD24777.1; -; mRNA.
DR   RefSeq; XP_015647755.1; XM_015792269.1.
DR   SMR; Q5K5B6; -.
DR   STRING; 4530.OS07T0647900-01; -.
DR   iPTMnet; Q5K5B6; -.
DR   PaxDb; Q5K5B6; -.
DR   PRIDE; Q5K5B6; -.
DR   EnsemblPlants; Os07t0647900-01; Os07t0647900-01; Os07g0647900.
DR   GeneID; 4344113; -.
DR   Gramene; Os07t0647900-01; Os07t0647900-01; Os07g0647900.
DR   KEGG; osa:4344113; -.
DR   eggNOG; KOG0344; Eukaryota.
DR   eggNOG; ENOG410XQS8; LUCA.
DR   HOGENOM; HOG000242486; -.
DR   InParanoid; Q5K5B6; -.
DR   KO; K14779; -.
DR   OMA; ICTTPRF; -.
DR   OrthoDB; 400908at2759; -.
DR   Proteomes; UP000059680; Chromosome 7.
DR   Genevisible; Q5K5B6; OS.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   GO; GO:0030490; P:maturation of SSU-rRNA; IBA:GO_Central.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Coiled coil; Complete proteome; Helicase; Hydrolase;
KW   Nucleotide-binding; Reference proteome; RNA-binding.
FT   CHAIN         1    540       DEAD-box ATP-dependent RNA helicase 57.
FT                                /FTId=PRO_0000282506.
FT   DOMAIN      177    347       Helicase ATP-binding.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00541}.
FT   DOMAIN      375    519       Helicase C-terminal.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00542}.
FT   NP_BIND     190    197       ATP. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00541}.
FT   COILED      101    129       {ECO:0000255}.
FT   MOTIF       146    174       Q motif.
FT   MOTIF       294    297       DEAD box.
SQ   SEQUENCE   540 AA;  60110 MW;  F51DD56B207A4DB8 CRC64;
     MEKAKLSSAL FAGTHFDRKR FAGDFARFRQ GPPAPDVASA AAPSPEKKRK RQSKAKAKKS
     KKRRAEGADS ASDAVEGFSV FKGLAAKKDE DDSEKKVETG KSEDSEVVRR RKEVEREIER
     AAILRKKFDI HISGQNVPAP LENFEELVSR YGCDSYLVGN LSKLGFQEPT PIQRQAIPIL
     LSGRECFACA PTGSGKTLAF LFPILMKIKP GSKEGVKAVI LCPTRELAAQ TTRECKKLAK
     GRKFYIKLMT KDLSKSGNFK DMHCDILIST PLRLDHAVQK RDLDLSRVEY LVLDESDKLF
     ELGFVEVIDS VVKACSNPSI IRSLFSATLP DSIETLARTI MHDAVRVIVG RKNSASSLIK
     QKLIFAGTEK GKLLALRQSF AESLNPPVLI FVQSKERAKE LYKELAFDDV RADVIHADLD
     EEQRQDAVDN LRAGKTWVLI ATEVIARGMD FKGVNCVINY DFPESASAYI HRIGRSGRAG
     RSGEAITFFT EEDKPFLRNI ANVLISSGCE VPSWIKALPK LKRKKHRVNR DPISTLPDED
//
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