ID Q5LKX0_RUEPO Unreviewed; 347 AA.
AC Q5LKX0;
DT 01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT 01-FEB-2005, sequence version 1.
DT 27-MAR-2024, entry version 112.
DE SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:AAV97393.1};
GN OrderedLocusNames=SPOA0259 {ECO:0000313|EMBL:AAV97393.1};
OS Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter
OS pomeroyi).
OG Plasmid megaplasmid Spo {ECO:0000313|Proteomes:UP000001023}.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Ruegeria.
OX NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV97393.1, ECO:0000313|Proteomes:UP000001023};
RN [1] {ECO:0000313|EMBL:AAV97393.1, ECO:0000313|Proteomes:UP000001023}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RC PLASMID=Plasmid megaplasmid Spo {ECO:0000313|Proteomes:UP000001023};
RX PubMed=15602564; DOI=10.1038/nature03170;
RA Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E., Sheldon W.M.,
RA Ye W., Miller T.R., Carlton J., Rasko D.A., Paulsen I.T., Ren Q.,
RA Daugherty S.C., Deboy R.T., Dodson R.J., Durkin A.S., Madupu R.,
RA Nelson W.C., Sullivan S.A., Rosovitz M.J., Haft D.H., Selengut J., Ward N.;
RT "Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine
RT environment.";
RL Nature 432:910-913(2004).
RN [2] {ECO:0000313|EMBL:AAV97393.1, ECO:0000313|Proteomes:UP000001023}
RP GENOME REANNOTATION.
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RC PLASMID=Plasmid megaplasmid Spo {ECO:0000313|Proteomes:UP000001023};
RX PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA Rivers A.R., Smith C.B., Moran M.A.;
RT "An updated genome annotation for the model marine bacterium Ruegeria
RT pomeroyi DSS-3.";
RL Stand. Genomic Sci. 9:11-11(2014).
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DR EMBL; CP000032; AAV97393.1; -; Genomic_DNA.
DR RefSeq; WP_011242038.1; NC_006569.1.
DR AlphaFoldDB; Q5LKX0; -.
DR PaxDb; 246200-SPOA0259; -.
DR DNASU; 3196768; -.
DR KEGG; sil:SPOA0259; -.
DR eggNOG; COG1609; Bacteria.
DR HOGENOM; CLU_037628_6_3_5; -.
DR OrthoDB; 7170131at2; -.
DR Proteomes; UP000001023; Plasmid megaplasmid Spo.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd01392; HTH_LacI; 1.
DR CDD; cd01575; PBP1_GntR; 1.
DR Gene3D; 3.40.50.2300; -; 2.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR000843; HTH_LacI.
DR InterPro; IPR046335; LacI/GalR-like_sensor.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR028082; Peripla_BP_I.
DR PANTHER; PTHR30146; LACI-RELATED TRANSCRIPTIONAL REPRESSOR; 1.
DR PANTHER; PTHR30146:SF33; TRANSCRIPTIONAL REGULATOR-RELATED; 1.
DR Pfam; PF00356; LacI; 1.
DR Pfam; PF13377; Peripla_BP_3; 1.
DR SMART; SM00354; HTH_LACI; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 1.
DR PROSITE; PS50932; HTH_LACI_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Plasmid {ECO:0000313|EMBL:AAV97393.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 14..68
FT /note="HTH lacI-type"
FT /evidence="ECO:0000259|PROSITE:PS50932"
SQ SEQUENCE 347 AA; 37379 MW; 15242E0DF838F409 CRC64;
MSSTQNKPNK NNKVSLAQIA KAAGVSKMTA SRVLRDEGGF SESTRARVMA EIDRLGYVPN
RLATVFAGDQ RSTFVGVSIP ELGNEIFAQV LEGIDRKLGA FGHQTVLGMT EHALEQEEKW
LETVLSWQPA GLIVTGRSHT PKSIQLLSGA GIPLVEIWDF NSSPLDMSVG LNHFDSGYSM
GRYLTGLGYR QFGYVGTSHD TANAASARLA GYAKVIGDSG GSLKKQLLLK DAPGFYTGYY
GTEQLLAANS DVEVIYYQND NMAVGGLNYC QKRGLSIPGD IGIAGWGDLP IASILPYRLT
STAVPHLRIG MIAAEMVLSQ INGEARRRSQ DVGFTLIPGS TVRSQLE
//
