ID Q5NJJ7_DANRE Unreviewed; 299 AA.
AC Q5NJJ7; A0A8M2B3L2;
DT 01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT 01-FEB-2005, sequence version 1.
DT 27-MAR-2024, entry version 117.
DE SubName: Full=Matrilin-3 isoform X3 {ECO:0000313|RefSeq:XP_005156884.1};
DE SubName: Full=Matrilin-3b {ECO:0000313|EMBL:CAG27403.1, ECO:0000313|Ensembl:ENSDARP00000091423};
GN Name=matn3b {ECO:0000313|EMBL:CAG27403.1,
GN ECO:0000313|Ensembl:ENSDARP00000091423,
GN ECO:0000313|RefSeq:XP_005156884.1,
GN ECO:0000313|ZFIN:ZDB-GENE-050221-9};
GN Synonyms=zgc:123028 {ECO:0000313|RefSeq:XP_005156884.1};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|EMBL:CAG27403.1};
RN [1] {ECO:0000313|EMBL:CAG27403.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=15588228; DOI=10.1042/BJ20041486;
RA Ko Y.P., Kobbe B., Paulsson M., Wagener R.;
RT "Zebrafish (Danio rerio) matrilins: shared and divergent characteristics
RT with their mammalian counterparts.";
RL Biochem. J. 386:367-379(2005).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000091423}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000091423};
RG Ensembl;
RL Submitted (FEB-2012) to UniProtKB.
RN [3] {ECO:0000313|Ensembl:ENSDARP00000091423, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000091423};
RX PubMed=23594743; DOI=10.1038/nature12111;
RG Genome Reference Consortium Zebrafish;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Eliott D.,
RA Threadgold G., Harden G., Ware D., Begum S., Mortimore B., Mortimer B.,
RA Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M.,
RA Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M.,
RA Glithero R., Howden P., Barker N., Lloyd C., Stevens C., Harley J.,
RA Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D.,
RA Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K.,
RA Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R.,
RA Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M.,
RA Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M.,
RA Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M.,
RA Woodmansey R., Clark G., Cooper J., Cooper J., Tromans A., Grafham D.,
RA Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J.,
RA Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I.,
RA Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M.,
RA Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M.,
RA Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G., Osoegawa K., Zhu B.,
RA Rapp A., Widaa S., Langford C., Yang F., Schuster S.C., Carter N.P.,
RA Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R.,
RA Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I.,
RA Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H.,
RA Rogers J., Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the human
RT genome.";
RL Nature 496:498-503(2013).
RN [4] {ECO:0000313|RefSeq:XP_005156884.1}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|RefSeq:XP_005156884.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR EMBL; AL935163; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AJ698459; CAG27403.1; -; mRNA.
DR RefSeq; XP_005156884.1; XM_005156827.4.
DR Ensembl; ENSDART00000100650.6; ENSDARP00000091423.4; ENSDARG00000069265.6.
DR GeneID; 497645; -.
DR AGR; ZFIN:ZDB-GENE-050221-9; -.
DR CTD; 497645; -.
DR ZFIN; ZDB-GENE-050221-9; matn3b.
DR HOGENOM; CLU_008905_1_0_1; -.
DR OrthoDB; 1453590at2759; -.
DR TreeFam; TF330078; -.
DR Proteomes; UP000000437; Chromosome 13.
DR Bgee; ENSDARG00000069265; Expressed in larva and 10 other cell types or tissues.
DR GO; GO:0062023; C:collagen-containing extracellular matrix; IBA:GO_Central.
DR Gene3D; 1.20.5.30; -; 1.
DR Gene3D; 3.40.50.410; von Willebrand factor, type A domain; 1.
DR InterPro; IPR036337; Matrilin_cc_sf.
DR InterPro; IPR019466; Matrilin_coiled-coil_trimer.
DR InterPro; IPR002035; VWF_A.
DR InterPro; IPR036465; vWFA_dom_sf.
DR PANTHER; PTHR24020; COLLAGEN ALPHA; 1.
DR PANTHER; PTHR24020:SF12; MATRILIN-3; 1.
DR Pfam; PF10393; Matrilin_ccoil; 1.
DR Pfam; PF00092; VWA; 1.
DR PRINTS; PR00453; VWFADOMAIN.
DR SMART; SM01279; Matrilin_ccoil; 1.
DR SMART; SM00327; VWA; 1.
DR SUPFAM; SSF58002; Chicken cartilage matrix protein; 1.
DR SUPFAM; SSF53300; vWA-like; 1.
DR PROSITE; PS50234; VWFA; 1.
PE 2: Evidence at transcript level;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..21
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 22..299
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5015097965"
FT DOMAIN 69..244
FT /note="VWFA"
FT /evidence="ECO:0000259|PROSITE:PS50234"
SQ SEQUENCE 299 AA; 33260 MW; 18485578687812C8 CRC64;
MTCFIYVFAF FLSAFLMEAQ GTYGPYARNH NQLYAGRQRS PHISPNIPGH GNSINIGAPA
EPCKSRPLDL VFIIDSSRSV RPAEFEKVKI FLSEMVNSLD IGSDATRVAL VNYASTVNIE
FHLKKYFSKA EVKQAFSRID PLSTGTMTGM AIKTAMEQVF TENAGARPLK KGIGKVAIIV
TDGRPQDKVE EVSAAARASG IEIYAVGVDR AEMRSLKQMA SQPLDDHVFY VETYGVIEKL
TSKFRETLCE EARADLTENA CMCEAQIAFQ RKVHNSIQTL SSRLDDISNR VQQFDLRRA
//
