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Database: UniProt
Entry: Q5VRL3
LinkDB: Q5VRL3
Original site: Q5VRL3 
ID   SODF1_ORYSJ             Reviewed;         391 AA.
AC   Q5VRL3; A0A0P0WSA4;
DT   06-MAR-2013, integrated into UniProtKB/Swiss-Prot.
DT   07-DEC-2004, sequence version 1.
DT   16-JAN-2019, entry version 98.
DE   RecName: Full=Superoxide dismutase [Fe] 1, chloroplastic;
DE            EC=1.15.1.1;
DE   Flags: Precursor;
GN   OrderedLocusNames=Os06g0115400, LOC_Os06g02500;
GN   ORFNames=OsJ_19901, OSJNBa0019F11.15-1, P0541H01.37-1;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
RA   McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
RA   Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
RA   Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
RA   Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using
RT   next generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
RA   Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
RA   Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
RA   Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
RA   Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
RA   Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
RA   Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
RA   Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
RA   Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
RA   Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA   Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: Destroys superoxide anion radicals which are normally
CC       produced within the cells and which are toxic to biological
CC       systems. {ECO:0000250}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=2 H(+) + 2 superoxide = H2O2 + O2; Xref=Rhea:RHEA:20696,
CC         ChEBI:CHEBI:15378, ChEBI:CHEBI:15379, ChEBI:CHEBI:16240,
CC         ChEBI:CHEBI:18421; EC=1.15.1.1;
CC   -!- COFACTOR:
CC       Name=Fe cation; Xref=ChEBI:CHEBI:24875; Evidence={ECO:0000250};
CC       Note=Binds 1 Fe cation per subunit. {ECO:0000250};
CC   -!- SUBUNIT: Homodimer. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the iron/manganese superoxide dismutase
CC       family. {ECO:0000305}.
DR   EMBL; AP001389; BAD67766.1; -; Genomic_DNA.
DR   EMBL; AP002837; BAD67906.1; -; Genomic_DNA.
DR   EMBL; AP008212; BAF18526.1; -; Genomic_DNA.
DR   EMBL; AP014962; BAS95837.1; -; Genomic_DNA.
DR   EMBL; CM000143; EEE64982.1; -; Genomic_DNA.
DR   EMBL; AK111656; BAG99354.1; -; mRNA.
DR   RefSeq; XP_015641241.1; XM_015785755.1.
DR   UniGene; Os.20570; -.
DR   ProteinModelPortal; Q5VRL3; -.
DR   SMR; Q5VRL3; -.
DR   STRING; 39947.LOC_Os06g02500.1; -.
DR   PaxDb; Q5VRL3; -.
DR   EnsemblPlants; Os06t0115400-01; Os06t0115400-01; Os06g0115400.
DR   GeneID; 4339922; -.
DR   Gramene; Os06t0115400-01; Os06t0115400-01; Os06g0115400.
DR   KEGG; osa:4339922; -.
DR   eggNOG; KOG0876; Eukaryota.
DR   eggNOG; COG0605; LUCA.
DR   InParanoid; Q5VRL3; -.
DR   KO; K04564; -.
DR   OMA; PEDVEWI; -.
DR   OrthoDB; 1353361at2759; -.
DR   Proteomes; UP000059680; Chromosome 6.
DR   ExpressionAtlas; Q5VRL3; differential.
DR   Genevisible; Q5VRL3; OS.
DR   GO; GO:0042644; C:chloroplast nucleoid; IBA:GO_Central.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0004784; F:superoxide dismutase activity; IEA:UniProtKB-EC.
DR   Gene3D; 1.10.287.990; -; 1.
DR   Gene3D; 2.40.500.20; -; 1.
DR   InterPro; IPR001189; Mn/Fe_SOD.
DR   InterPro; IPR019833; Mn/Fe_SOD_BS.
DR   InterPro; IPR019832; Mn/Fe_SOD_C.
DR   InterPro; IPR019831; Mn/Fe_SOD_N.
DR   InterPro; IPR036324; Mn/Fe_SOD_N_sf.
DR   InterPro; IPR036314; SOD_C_sf.
DR   Pfam; PF02777; Sod_Fe_C; 1.
DR   Pfam; PF00081; Sod_Fe_N; 1.
DR   PRINTS; PR01703; MNSODISMTASE.
DR   SUPFAM; SSF46609; SSF46609; 1.
DR   SUPFAM; SSF54719; SSF54719; 1.
DR   PROSITE; PS00088; SOD_MN; 1.
PE   2: Evidence at transcript level;
KW   Chloroplast; Complete proteome; Iron; Metal-binding; Oxidoreductase;
KW   Plastid; Reference proteome; Transit peptide.
FT   TRANSIT       1     73       Chloroplast. {ECO:0000255}.
FT   CHAIN        74    391       Superoxide dismutase [Fe] 1,
FT                                chloroplastic.
FT                                /FTId=PRO_0000421267.
FT   METAL       148    148       Iron. {ECO:0000250}.
FT   METAL       202    202       Iron. {ECO:0000250}.
FT   METAL       301    301       Iron. {ECO:0000250}.
FT   METAL       305    305       Iron. {ECO:0000250}.
SQ   SEQUENCE   391 AA;  43420 MW;  061691FAB5C93215 CRC64;
     MAFATLVGVG GLSPALFSPS RPLSCSSSTS VSAPFILRAG GGGDARRHGL RRLVTPLRGS
     ACRGESTNSR VLQCANEANV VTEDDIVNDG IDDETASDAE MDEDAEANGD ESSGTDEDAS
     VSWIEQQPLP YPSDALEPYI SKETVEQHWG VHQNIHVERL NGMIGGSEWE GMSLGQMMLS
     SFNEGREAPH PPFFHAAQIW NHDFYWRSMQ PGGGGKPPER LLKFINRDFG SYDGMIRQFM
     DAASTQFGSG WVWLCYKTSK LPHVKSRSPI PSDNYGRLVI SKSPNAINPL VWGHSPLLAI
     DLWEHAYYLD YEDRRSDYVS TFLEKLVSWE TVESRLKKAV QRAVERDEYV STKHIRKQLL
     ARAKSQIRAM PQQVNGDARE QTSGQEKSLG V
//
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