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Database: UniProt
Entry: Q5VSB7
LinkDB: Q5VSB7
Original site: Q5VSB7 
ID   SODF2_ORYSJ             Reviewed;         255 AA.
AC   Q5VSB7; A0A0P0WSV1; Q9ZWM8;
DT   06-MAR-2013, integrated into UniProtKB/Swiss-Prot.
DT   07-DEC-2004, sequence version 1.
DT   13-FEB-2019, entry version 106.
DE   RecName: Full=Superoxide dismutase [Fe] 2, chloroplastic;
DE            EC=1.15.1.1;
DE   AltName: Full=Iron-superoxide dismutase;
DE   Flags: Precursor;
GN   OrderedLocusNames=Os06g0143000, LOC_Os06g05110; ORFNames=P0535G04.31;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], COFACTOR, FUNCTION, TISSUE SPECIFICITY,
RP   AND INDUCTION BY LIGHT.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=10192910; DOI=10.1271/bbb.63.302;
RA   Kaminaka H., Morita S., Tokumoto M., Yokoyama H., Masumura T.,
RA   Tanaka K.;
RT   "Molecular cloning and characterization of a cDNA for an iron-
RT   superoxide dismutase in rice (Oryza sativa L.).";
RL   Biosci. Biotechnol. Biochem. 63:302-308(1999).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
RA   McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
RA   Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
RA   Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
RA   Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using
RT   next generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: Destroys superoxide anion radicals which are normally
CC       produced within the cells and which are toxic to biological
CC       systems. {ECO:0000269|PubMed:10192910}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=2 H(+) + 2 superoxide = H2O2 + O2; Xref=Rhea:RHEA:20696,
CC         ChEBI:CHEBI:15378, ChEBI:CHEBI:15379, ChEBI:CHEBI:16240,
CC         ChEBI:CHEBI:18421; EC=1.15.1.1;
CC   -!- COFACTOR:
CC       Name=Fe cation; Xref=ChEBI:CHEBI:24875;
CC         Evidence={ECO:0000269|PubMed:10192910};
CC       Note=Binds 1 Fe cation per subunit. {ECO:0000269|PubMed:10192910};
CC   -!- SUBUNIT: Homodimer. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000250}.
CC   -!- TISSUE SPECIFICITY: Strongly expressed in the stems of the young
CC       seedlings, etiolated seedlings and embryogenic calli, but only
CC       minimally expressed in the leaves and the roots.
CC       {ECO:0000269|PubMed:10192910}.
CC   -!- INDUCTION: By light. {ECO:0000269|PubMed:10192910}.
CC   -!- SIMILARITY: Belongs to the iron/manganese superoxide dismutase
CC       family. {ECO:0000305}.
DR   EMBL; AB014056; BAA37131.1; -; mRNA.
DR   EMBL; AP000399; BAD67658.1; -; Genomic_DNA.
DR   EMBL; AP008212; BAF18688.1; -; Genomic_DNA.
DR   EMBL; AP014962; BAS96109.1; -; Genomic_DNA.
DR   EMBL; AK062073; BAG88209.1; -; mRNA.
DR   EMBL; AK071301; BAG92419.1; -; mRNA.
DR   PIR; JG0179; JG0179.
DR   RefSeq; XP_015642495.1; XM_015787009.1.
DR   RefSeq; XP_015642496.1; XM_015787010.1.
DR   UniGene; Os.3583; -.
DR   ProteinModelPortal; Q5VSB7; -.
DR   SMR; Q5VSB7; -.
DR   STRING; 39947.LOC_Os06g05110.1; -.
DR   PaxDb; Q5VSB7; -.
DR   EnsemblPlants; Os06t0143000-01; Os06t0143000-01; Os06g0143000.
DR   GeneID; 4340091; -.
DR   Gramene; Os06t0143000-01; Os06t0143000-01; Os06g0143000.
DR   KEGG; osa:4340091; -.
DR   eggNOG; KOG0876; Eukaryota.
DR   eggNOG; COG0605; LUCA.
DR   InParanoid; Q5VSB7; -.
DR   KO; K04564; -.
DR   OMA; YLHSIFW; -.
DR   OrthoDB; 1353361at2759; -.
DR   Proteomes; UP000059680; Chromosome 6.
DR   Genevisible; Q5VSB7; OS.
DR   GO; GO:0042644; C:chloroplast nucleoid; IBA:GO_Central.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0004784; F:superoxide dismutase activity; IDA:UniProtKB.
DR   GO; GO:0055114; P:oxidation-reduction process; IDA:UniProtKB.
DR   Gene3D; 1.10.287.990; -; 1.
DR   Gene3D; 2.40.500.20; -; 1.
DR   InterPro; IPR001189; Mn/Fe_SOD.
DR   InterPro; IPR019833; Mn/Fe_SOD_BS.
DR   InterPro; IPR019832; Mn/Fe_SOD_C.
DR   InterPro; IPR019831; Mn/Fe_SOD_N.
DR   InterPro; IPR036324; Mn/Fe_SOD_N_sf.
DR   InterPro; IPR036314; SOD_C_sf.
DR   Pfam; PF02777; Sod_Fe_C; 1.
DR   Pfam; PF00081; Sod_Fe_N; 1.
DR   PIRSF; PIRSF000349; SODismutase; 1.
DR   PRINTS; PR01703; MNSODISMTASE.
DR   SUPFAM; SSF46609; SSF46609; 1.
DR   SUPFAM; SSF54719; SSF54719; 1.
DR   PROSITE; PS00088; SOD_MN; 1.
PE   2: Evidence at transcript level;
KW   Chloroplast; Complete proteome; Iron; Metal-binding; Oxidoreductase;
KW   Plastid; Reference proteome; Transit peptide.
FT   TRANSIT       1     32       Chloroplast. {ECO:0000255}.
FT   CHAIN        33    255       Superoxide dismutase [Fe] 2,
FT                                chloroplastic.
FT                                /FTId=PRO_0000421268.
FT   METAL        67     67       Iron. {ECO:0000250}.
FT   METAL       119    119       Iron. {ECO:0000250}.
FT   METAL       203    203       Iron. {ECO:0000250}.
FT   METAL       207    207       Iron. {ECO:0000250}.
FT   CONFLICT    170    170       W -> L (in Ref. 1; BAA37131).
FT                                {ECO:0000305}.
FT   CONFLICT    180    180       F -> L (in Ref. 1; BAA37131).
FT                                {ECO:0000305}.
SQ   SEQUENCE   255 AA;  29477 MW;  C1231959CBD2ACF8 CRC64;
     MAAFASALRV LPSPPAAVPR RLRSREQRQG CRSRRYSKVV AYYALTTPPY KLDALEPYIS
     KRTVELHWGK HQQDYVDSLN KQLATSMFYG YTLEELIKEA YNNGNPLPEY NNAAQVWNHH
     FFWESMQPEG GGSPGRGVLQ QIEKDFGSFT NFREEFIRSA LSLLGSGWVW LVLKRKERKF
     SVVHTQNAIS PLALGDIPLI NLDLWEHAYY LDYKDDRRMY VTNFIDHLVS WDTVTLRMMR
     AEAFVNLGEP NIPVA
//
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